Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 3e-16
seq10 96.9 3e-15
>seq6
Length=6290098
Score = 100 bits (110), Expect = 3e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| || | || |||||| |||| ||||||||||||||
Sbjct 607065 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 607006
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| ||||||| |||||||| ||||| ||||| || || || || || || || |||
Sbjct 607005 GCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTC 606946
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
|| || | ||||| || || || || | ||| | ||||||||||||
Sbjct 606945 ACGTTATCAATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 606893
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || ||||| | || || || || |||||||||||||| |
Sbjct 607610 ACCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGA 607551
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| || | || ||||||||||| ||||| | || | |||||||||||||||||
Sbjct 607550 CAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGG 607491
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || ||||| || || ||| || || | || || | || ||
Sbjct 607490 AATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAAC 607431
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||| || | || || |||||||| |||||
Sbjct 607430 CTCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || ||||| || || ||||||||||| | ||||| | |||
Sbjct 607822 AGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCT 607763
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || || | || || ||||||||||| || ||||| || || || ||
Sbjct 607762 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCC 607703
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || ||| | || ||||| | || | |||
Sbjct 607702 TGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTC 607643
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || |||| || || ||||| || |||||
Sbjct 607642 TTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611
Score = 82.4 bits (90), Expect = 8e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||| || | ||| | || || || || ||||||||||| || |
Sbjct 607382 ACCACCGCGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGA 607323
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| | || ||||| |||||||| ||| | || | ||||||||||| || ||
Sbjct 607322 CAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGG 607263
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || || || || || ||| ||| || | |||||| | || ||
Sbjct 607262 GATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGAC 607203
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433
|| | || | ||||||||| || | || || ||||
Sbjct 607202 CTCAAGGGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 607165
>seq10
Length=4416304
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || || || | || || || || || |||||||| || |
Sbjct 3556405 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3556464
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| |||||| |||| || |||||||| ||||| | || || |||||||||||||| ||
Sbjct 3556465 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 3556524
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| ||| || | || || | |||||
Sbjct 3556525 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 3556584
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||| |||| || || ||||| || |||||
Sbjct 3556585 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644587650960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |