Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq6 313 2e-80 >seq6 Length=6290098 Score = 313 bits (346), Expect = 2e-80 Identities = 1087/1673 (65%), Gaps = 40/1673 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || ||||||| || ||||| |||||| | |||||| Sbjct 2839991 AACTACCAATACTTCGGCTTCAAGACCCTGGAGAGATCATACCTGCTCAAGCTTGATGGC 2839932 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| |||| || || || | ||||| || || |||| || || | Sbjct 2839931 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGAT 2839872 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | || | | | | || |||| |||| | ||| ||| Sbjct 2839871 AACGTCGAGCGCGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCATGCC 2839812 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952 |||| || || |||||||| || ||||| |||||| | ||||||| || ||||| Sbjct 2839811 TCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCA--GCTGTCTTCATGCTTCCTCG 2839754 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | |||| ||||| || || || | ||||| ||||||| ||| || | Sbjct 2839753 TCGAC-ATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATG 2839695 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069 ||||| || || || || || || ||| | ||| |||| ||||||| || | Sbjct 2839694 ATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTCAC--CGTATTCGTGCCACTGGCT 2839637 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 |||| || ||| ||||| |||||||| ||||| || | || ||||| || ||||| | Sbjct 2839636 CCTATATTGCCGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTA 2839577 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| | || |||||||| ||||||||||| | | | || ||||||| | | Sbjct 2839576 ACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATTT 2839517 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || ||||| |||||||| ||||| | ||||| ||| |||| |||||||| |||| Sbjct 2839516 ACCTTGAGCCGTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCA 2839457 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | ||| | ||||| ||| |||||||||| | || || || || |||| Sbjct 2839456 AGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGA 2839397 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | |||||||| ||| ||| ||||| || | || |||||||| || || || ||| Sbjct 2839396 AGAGAGTCGAGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGG 2839337 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 | ||| | ||| | || || | |||||| | |||| | ||| |||||||| Sbjct 2839336 CTGACTGCTATGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACG-AGCGCGAGGGCAAG 2839278 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | ||| || | || |||||| ||| || ||| | || | ||| ||| Sbjct 2839277 GGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAG 2839218 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || | |||| ||| | | |||||| ||| |||| |||| ||||||| || || Sbjct 2839217 ACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAAC 2839158 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| ||| ||||| || || ||||| ||||| | ||||| | || || Sbjct 2839157 CTCGGAACTATCCGCAGCTCCAACCTTTGCACTGAGATCATTGAGTACTGCGCACCCGAT 2839098 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| | ||||| || ||| ||| ||| | ||| |||| ||||| || |||| Sbjct 2839097 GAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGT------TGACTAC 2839044 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACTT-CGCGGGAAGGATGGTCT 94726 | | | || | | ||| | || ||||| || || | | || | | || Sbjct 2839043 A--ACGA-TGGTGTCTACGACTTCCAGAAGCTTCACGAGGTTACTCAGGTCG--TTGTTC 2838989 Query 94727 TGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 ||| |||||| | | || || ||| ||||||||| || ||||| ||| | Sbjct 2838988 GCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAACAGCA 2838929 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || || || || ||||| || | || ||||||||| | || || || | | Sbjct 2838928 ACATGCGTCACCGCCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCC 2838869 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 | || |||| | ||| ||| || || | | | || ||| || ||||| | || Sbjct 2838868 TTCGCATGCCTTTCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCA 2838809 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 | || ||| || | | || || || |||||| ||| ||| | || | Sbjct 2838808 TCTACCACGCTGCTCTTACCATGTCTGTTCAGCTGGCCAAGGAGGAGGGC-ACCTACTCC 2838750 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | ||| | || || || | ||||| || | |||| |||| | ||| ||| | Sbjct 2838749 A--CGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCA 2838692 Query 95027 AGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGT 95084 ||||||| | || | || ||||| | || | | || || | | | |||||||| Sbjct 2838691 AGCCCTCTGACCTCTGGGATTGGGACTCACTGAAGGAGCAGA--TCAAGGAGCACGGTGT 2838634 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 | ||| |||| || || |||||||| || |||||||| |||||||| | ||||| Sbjct 2838633 GCGCAACAGTTTGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAA 2838574 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 |||||||| ||||| |||| |||||||||| | ||| | | || || || ||||| || Sbjct 2838573 CAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAACGTCGTGTTCTTGCCGGCGA 2838514 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGG---G 95260 |||| || ||||| | | ||| || | || | |||| ||||| | Sbjct 2838513 GTTCCAGGTTGTCAACCCCTGGTTGTTGAAGGATCTCGTCGAC-ATGGGCCTGTGGTCCG 2838455 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAA 95320 || || | ||||||| | | || ||||| || ||||||||||||| | | Sbjct 2838454 ATGCCA---TGAAGAACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAACA 2838398 Query 95321 TACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || | || ||||||| || ||||||||||| ||||||||| | |||||| Sbjct 2838397 TTCCCGCTGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAGATCTCCCAGCGC 2838345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722989742640