Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq6 313 2e-80
>seq6
Length=6290098
Score = 313 bits (346), Expect = 2e-80
Identities = 1087/1673 (65%), Gaps = 40/1673 (2%)
Strand=Plus/Minus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||| | |||||| || ||||||| || ||||| |||||| | ||||||
Sbjct 2839991 AACTACCAATACTTCGGCTTCAAGACCCTGGAGAGATCATACCTGCTCAAGCTTGATGGC 2839932
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||| |||| || || || | ||||| || || |||| || || |
Sbjct 2839931 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGAT 2839872
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| | | || | | | | || |||| |||| | ||| |||
Sbjct 2839871 AACGTCGAGCGCGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCATGCC 2839812
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952
|||| || || |||||||| || ||||| |||||| | ||||||| || |||||
Sbjct 2839811 TCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCA--GCTGTCTTCATGCTTCCTCG 2839754
Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
| ||| | |||| ||||| || || || | ||||| ||||||| ||| || |
Sbjct 2839753 TCGAC-ATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATG 2839695
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069
||||| || || || || || || ||| | ||| |||| ||||||| || |
Sbjct 2839694 ATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTCAC--CGTATTCGTGCCACTGGCT 2839637
Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129
|||| || ||| ||||| |||||||| ||||| || | || ||||| || ||||| |
Sbjct 2839636 CCTATATTGCCGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTA 2839577
Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189
||||| | || |||||||| ||||||||||| | | | || ||||||| | |
Sbjct 2839576 ACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATTT 2839517
Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249
| || ||||| |||||||| ||||| | ||||| ||| |||| |||||||| ||||
Sbjct 2839516 ACCTTGAGCCGTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCA 2839457
Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309
| || || | ||| | ||||| ||| |||||||||| | || || || || ||||
Sbjct 2839456 AGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGA 2839397
Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369
| | |||||||| ||| ||| ||||| || | || |||||||| || || || |||
Sbjct 2839396 AGAGAGTCGAGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGG 2839337
Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428
| ||| | ||| | || || | |||||| | |||| | ||| ||||||||
Sbjct 2839336 CTGACTGCTATGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACG-AGCGCGAGGGCAAG 2839278
Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488
| | ||| || | || |||||| ||| || ||| | || | ||| |||
Sbjct 2839277 GGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAG 2839218
Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548
|| || | |||| ||| | | |||||| ||| |||| |||| ||||||| || ||
Sbjct 2839217 ACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAAC 2839158
Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608
||||| ||| ||||| || || ||||| ||||| | ||||| | || ||
Sbjct 2839157 CTCGGAACTATCCGCAGCTCCAACCTTTGCACTGAGATCATTGAGTACTGCGCACCCGAT 2839098
Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668
||| | ||||| || ||| ||| ||| | ||| |||| ||||| || ||||
Sbjct 2839097 GAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGT------TGACTAC 2839044
Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACTT-CGCGGGAAGGATGGTCT 94726
| | | || | | ||| | || ||||| || || | | || | | ||
Sbjct 2839043 A--ACGA-TGGTGTCTACGACTTCCAGAAGCTTCACGAGGTTACTCAGGTCG--TTGTTC 2838989
Query 94727 TGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786
||| |||||| | | || || ||| ||||||||| || ||||| ||| |
Sbjct 2838988 GCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAACAGCA 2838929
Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846
|| || || || ||||| || | || ||||||||| | || || || | |
Sbjct 2838928 ACATGCGTCACCGCCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCC 2838869
Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906
| || |||| | ||| ||| || || | | | || ||| || ||||| | ||
Sbjct 2838868 TTCGCATGCCTTTCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCA 2838809
Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966
| || ||| || | | || || || |||||| ||| ||| | || |
Sbjct 2838808 TCTACCACGCTGCTCTTACCATGTCTGTTCAGCTGGCCAAGGAGGAGGGC-ACCTACTCC 2838750
Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026
| ||| | || || || | ||||| || | |||| |||| | ||| ||| |
Sbjct 2838749 A--CGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCA 2838692
Query 95027 AGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGT 95084
||||||| | || | || ||||| | || | | || || | | | ||||||||
Sbjct 2838691 AGCCCTCTGACCTCTGGGATTGGGACTCACTGAAGGAGCAGA--TCAAGGAGCACGGTGT 2838634
Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144
| ||| |||| || || |||||||| || |||||||| |||||||| | |||||
Sbjct 2838633 GCGCAACAGTTTGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAA 2838574
Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204
|||||||| ||||| |||| |||||||||| | ||| | | || || || ||||| ||
Sbjct 2838573 CAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAACGTCGTGTTCTTGCCGGCGA 2838514
Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGG---G 95260
|||| || ||||| | | ||| || | || | |||| ||||| |
Sbjct 2838513 GTTCCAGGTTGTCAACCCCTGGTTGTTGAAGGATCTCGTCGAC-ATGGGCCTGTGGTCCG 2838455
Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAA 95320
|| || | ||||||| | | || ||||| || ||||||||||||| | |
Sbjct 2838454 ATGCCA---TGAAGAACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAACA 2838398
Query 95321 TACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373
| || | || ||||||| || ||||||||||| ||||||||| | ||||||
Sbjct 2838397 TTCCCGCTGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAGATCTCCCAGCGC 2838345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494722989742640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |