Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq9 123 2e-23
seq10 104 2e-17
seq6 95.1 1e-14
>seq9
Length=4851470
Score = 123 bits (136), Expect = 2e-23
Identities = 338/506 (67%), Gaps = 25/506 (5%)
Strand=Plus/Plus
Query 52336 TTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGCCACGCTGGCC 52394
||||||| |||||| | ||||| ||||||||||| | || || | | || | | |||
Sbjct 3450472 TTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGA-TGAGAACTCCTCCTTCGCC 3450530
Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454
|||| |||| ||||| ||| || ||||| | || || ||| |||||| ||
Sbjct 3450531 CAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCC 3450590
Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514
||||||| | || | | ||| | |||||||| ||||| ||| ||||||| | ||
Sbjct 3450591 ATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATC 3450650
Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT---ACAAGACGCGC 52568
|| || ||||| || |||||||| |||||||| |||||| |||| || | || |
Sbjct 3450651 TCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCAC 3450710
Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626
| || || || | | || || |||| ||| || || || || |
Sbjct 3450711 -CGCCCCAACAA--GCA---GGTCA-----TTGAGGACATCATCGTTGATGCCGTCAAGA 3450759
Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686
| || ||||||| | || | || ||||| || || || ||||||||| | | |
Sbjct 3450760 TTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACT 3450819
Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGCCA 52745
||| ||||||| ||||| || || || || || |||| |||| |||| | |
Sbjct 3450820 TGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGT--CGCTCTTGGCAACGA 3450877
Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804
||| || ||| | ||| || || || || ||| | ||||| || |||| |||||
Sbjct 3450878 CAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAA 3450937
Query 52805 GACCAACTTTTTCGAGAAGCGAGTCG 52830
||||||||| || |||||||| ||||
Sbjct 3450938 GACCAACTTCTTTGAGAAGCGTGTCG 3450963
>seq10
Length=4416304
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| || ||||||||||||
Sbjct 3556406 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3556465
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || || |||| |||| || ||||| ||||| || ||
Sbjct 3556466 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 3556525
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | |||| || | |||||||| |||||||||
Sbjct 3556526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGACGACTCCAC 3556584
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || || || ||||| || || || || |||||||||
Sbjct 3556585 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 3556633
>seq6
Length=6290098
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| || | ||| | |||||||||| ||||||||||| || |
Sbjct 607609 CCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 607550
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| || || || |||| |||| | ||||| ||||| |||||
Sbjct 607549 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 607490
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || || || ||| || || | | || | |||||| | || || |||
Sbjct 607489 ATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 607430
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| ||| | ||| || || || || || || || |||||||||||
Sbjct 607429 TCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262189088480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |