Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq10 104 2e-17 seq6 95.1 1e-14 >seq9 Length=4851470 Score = 123 bits (136), Expect = 2e-23 Identities = 338/506 (67%), Gaps = 25/506 (5%) Strand=Plus/Plus Query 52336 TTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGCCACGCTGGCC 52394 ||||||| |||||| | ||||| ||||||||||| | || || | | || | | ||| Sbjct 3450472 TTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGA-TGAGAACTCCTCCTTCGCC 3450530 Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 |||| |||| ||||| ||| || ||||| | || || ||| |||||| || Sbjct 3450531 CAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCC 3450590 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||||| | || | | ||| | |||||||| ||||| ||| ||||||| | || Sbjct 3450591 ATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATC 3450650 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT---ACAAGACGCGC 52568 || || ||||| || |||||||| |||||||| |||||| |||| || | || | Sbjct 3450651 TCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCAC 3450710 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626 | || || || | | || || |||| ||| || || || || | Sbjct 3450711 -CGCCCCAACAA--GCA---GGTCA-----TTGAGGACATCATCGTTGATGCCGTCAAGA 3450759 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 | || ||||||| | || | || ||||| || || || ||||||||| | | | Sbjct 3450760 TTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACT 3450819 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGCCA 52745 ||| ||||||| ||||| || || || || || |||| |||| |||| | | Sbjct 3450820 TGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGT--CGCTCTTGGCAACGA 3450877 Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804 ||| || ||| | ||| || || || || ||| | ||||| || |||| ||||| Sbjct 3450878 CAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAA 3450937 Query 52805 GACCAACTTTTTCGAGAAGCGAGTCG 52830 ||||||||| || |||||||| |||| Sbjct 3450938 GACCAACTTCTTTGAGAAGCGTGTCG 3450963 >seq10 Length=4416304 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 3556406 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3556465 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| |||| || ||||| ||||| || || Sbjct 3556466 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 3556525 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| ||||||||| Sbjct 3556526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGACGACTCCAC 3556584 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || || ||||| || || || || ||||||||| Sbjct 3556585 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 3556633 >seq6 Length=6290098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | ||| | |||||||||| ||||||||||| || | Sbjct 607609 CCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 607550 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || || || |||| |||| | ||||| ||||| ||||| Sbjct 607549 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 607490 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || || | | || | |||||| | || || ||| Sbjct 607489 ATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 607430 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||| || || || || || || || ||||||||||| Sbjct 607429 TCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262189088480