Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 seq10 114 1e-20 seq9 113 4e-20 seq14 87.8 2e-12 >seq6 Length=6290098 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | || ||||| || ||||| |||||||| | Sbjct 607609 CCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 607550 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| ||||| ||| ||||||| |||||||| |||||||| Sbjct 607549 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 607490 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| || ||| ||| ||||| ||||| | | |||||| | | || || Sbjct 607489 ATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGT-CAATGGTGTCTGAAGATTCAAC 607431 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| || || || || || ||||||||||| Sbjct 607430 CTCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | || || || || || || |||||||||| || |||||| ||| || Sbjct 607819 ACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCC 607760 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||||||| |||| | |||||||| || || || || |||||||||||| | Sbjct 607759 AGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 607700 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | || | ||||| | ||||||||| | || | ||| || Sbjct 607699 ATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTT 607640 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || |||||||| Sbjct 607639 CCAGTCAGCGTCTTGACGAAGATCTGCAT 607611 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||||| | || ||||| || ||||| ||||| ||| | Sbjct 607381 CCACCGCGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 607322 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || ||||| ||||||| |||||||| || || || Sbjct 607321 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 607262 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| || ||| ||||| | |||| ||| || | | |||||| Sbjct 607261 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 607202 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || ||||| || || || || || Sbjct 607201 TCAAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 607167 Score = 102 bits (112), Expect = 8e-17 Identities = 324/491 (66%), Gaps = 11/491 (2%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| ||||| ||||||||||| ||||| || | | || | |||| |||| | | Sbjct 2838497 GGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGG 2838556 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||||| |||||||||| || | ||||||| || | || ||||||||| || | Sbjct 2838557 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAA 2838616 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTC 146241 | |||||| ||| | ||| ||||| || ||| |||| ||| ||| | ||||| | Sbjct 2838617 CGAGCAAACTGTTGCGCACACCGTGCTCCTTG-ATCTGCTCCTTCAGTGAGTCCCAATCC 2838675 Query 146242 CACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGG 146301 || | | || | ||| | || ||| | ||||||| || | | || || | | Sbjct 2838676 CAGA---GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATA 2838732 Query 146302 GGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAG-TTCGCAGCTAGCTTC 146360 ||| |||||||| || | || || ||||||||| | ||| | | Sbjct 2838733 GGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATGGT- 2838791 Query 146361 CAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGC 146419 ||||| | ||| |||||||| |||| | | ||||| | || | |||||| Sbjct 2838792 AAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGA-GATCACGGGCCTCAGGAG 2838850 Query 146420 TGTCGTAGGGGATATCGAGAAGC-ACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCA 146478 ||| | || || ||| || | || || || || |||||||| | || | |||| Sbjct 2838851 ACTCGAAAGGCAT-GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCA 2838909 Query 146479 ACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCG 146538 | ||||||||| | |||| ||||| ||| | | | ||| ||||||||| || Sbjct 2838910 ATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCA 2838969 Query 146539 ATGATCTTGTT 146549 ||||||||||| Sbjct 2838970 ATGATCTTGTT 2838980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| ||| Sbjct 607095 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 607036 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| | || | |||||||||||||| || Sbjct 607035 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGA 606976 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | || | ||| || | |||||| Sbjct 606975 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTCGACC 606916 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 |||| || | || |||||||| Sbjct 606915 TCGAGAGTGATGGTCTTGCCGGT 606893 >seq10 Length=4416304 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | || ||||| || || || ||||| ||| Sbjct 3556406 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3556465 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| || Sbjct 3556466 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 3556525 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 3556526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3556585 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||||| ||||| || || || || ||||||||| Sbjct 3556586 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 3556633 >seq9 Length=4851470 Score = 113 bits (124), Expect = 4e-20 Identities = 332/509 (65%), Gaps = 16/509 (3%) Strand=Plus/Plus Query 47070 CCCTGCG-TGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCAC 47128 |||||| | |||| ||||| || |||||| |||||| || | || ||| | | Sbjct 3450464 CCCTGCCATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTC 3450523 Query 47129 TCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT 47188 | ||| | ||| || | || || ||| || ||||| |||||||| || || Sbjct 3450524 CTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTT 3450583 Query 47189 TGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGA 47248 ||| | || |||| | || | || | |||||||| || || || |||||| Sbjct 3450584 TGCCTCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGA 3450643 Query 47249 GCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AACA 47304 ||| ||||| | ||||| || ||||||||| |||||||||| |||| ||| | | Sbjct 3450644 GCTCATCTCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTACTCTCACCT 3450703 Query 47305 CTAGAGTCGATCAAA--AGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGT 47362 | || || | || || || | | | || ||||| | | || ||||| Sbjct 3450704 CAAGCACCGCCCCAACAAGCAGGTCAT--------TGAG-GACATCATCGTTGATGCCGT 3450754 Query 47363 CGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGC 47422 | |||||| |||||| || | |||||||||||| || | | || |||||| | Sbjct 3450755 CAAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTC 3450814 Query 47423 GGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTA 47482 | |||||| ||||||| || || || ||||||||||| || || || | Sbjct 3450815 CAACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAA 3450874 Query 47483 TCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGG 47542 |||| | ||| | || || || ||||| || ||| | ||||| || || | || Sbjct 3450875 CGACAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGG 3450934 Query 47543 CAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 |||||||||||| || |||||||| |||| Sbjct 3450935 CAAGACCAACTTCTTTGAGAAGCGTGTCG 3450963 >seq14 Length=3529981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || |||||| ||||| Sbjct 714226 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 714167 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 714166 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 714107 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || || || ||||| || || || ||| Sbjct 714106 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 714047 Query 127106 ATCTGCA 127112 ||||| Sbjct 714046 --CTGCA 714042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500597912160