Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 1e-26
seq10 114 1e-20
seq9 113 4e-20
seq14 87.8 2e-12
>seq6
Length=6290098
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| || | ||| | || ||||| || ||||| |||||||| |
Sbjct 607609 CCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 607550
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || ||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct 607549 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 607490
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||| || ||| ||| ||||| ||||| | | |||||| | | || ||
Sbjct 607489 ATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGT-CAATGGTGTCTGAAGATTCAAC 607431
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | ||| ||||| || || || || || |||||||||||
Sbjct 607430 CTCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||| ||| | || || || || || || |||||||||| || |||||| ||| ||
Sbjct 607819 ACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCC 607760
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| ||||||||| |||| | |||||||| || || || || |||||||||||| |
Sbjct 607759 AGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 607700
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| || ||| | | || | ||||| | ||||||||| | || | ||| ||
Sbjct 607699 ATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTT 607640
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| || || || || ||||||||
Sbjct 607639 CCAGTCAGCGTCTTGACGAAGATCTGCAT 607611
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | |||||||| | || ||||| || ||||| ||||| ||| |
Sbjct 607381 CCACCGCGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 607322
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || || ||||| ||||||| |||||||| || || ||
Sbjct 607321 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 607262
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||| ||| || ||| ||||| | |||| ||| || | | ||||||
Sbjct 607261 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 607202
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | ||| | || ||||| || || || || ||
Sbjct 607201 TCAAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 607167
Score = 102 bits (112), Expect = 8e-17
Identities = 324/491 (66%), Gaps = 11/491 (2%)
Strand=Plus/Plus
Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122
||||||| ||||| ||||||||||| ||||| || | | || | |||| |||| | |
Sbjct 2838497 GGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGG 2838556
Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182
||||||| |||||||||| || | ||||||| || | || ||||||||| || |
Sbjct 2838557 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAA 2838616
Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTC 146241
| |||||| ||| | ||| ||||| || ||| |||| ||| ||| | ||||| |
Sbjct 2838617 CGAGCAAACTGTTGCGCACACCGTGCTCCTTG-ATCTGCTCCTTCAGTGAGTCCCAATCC 2838675
Query 146242 CACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGG 146301
|| | | || | ||| | || ||| | ||||||| || | | || || | |
Sbjct 2838676 CAGA---GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATA 2838732
Query 146302 GGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAG-TTCGCAGCTAGCTTC 146360
||| |||||||| || | || || ||||||||| | ||| | |
Sbjct 2838733 GGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATGGT- 2838791
Query 146361 CAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGC 146419
||||| | ||| |||||||| |||| | | ||||| | || | ||||||
Sbjct 2838792 AAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGA-GATCACGGGCCTCAGGAG 2838850
Query 146420 TGTCGTAGGGGATATCGAGAAGC-ACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCA 146478
||| | || || ||| || | || || || || |||||||| | || | ||||
Sbjct 2838851 ACTCGAAAGGCAT-GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCA 2838909
Query 146479 ACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCG 146538
| ||||||||| | |||| ||||| ||| | | | ||| ||||||||| ||
Sbjct 2838910 ATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCA 2838969
Query 146539 ATGATCTTGTT 146549
|||||||||||
Sbjct 2838970 ATGATCTTGTT 2838980
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | |||||||| || || || ||||| |||
Sbjct 607095 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 607036
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || |||||| | || | |||||||||||||| ||
Sbjct 607035 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGA 606976
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||| | | || | ||| || | ||||||
Sbjct 606975 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTCGACC 606916
Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089
|||| || | || ||||||||
Sbjct 606915 TCGAGAGTGATGGTCTTGCCGGT 606893
>seq10
Length=4416304
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||| || | || ||||| || || || ||||| |||
Sbjct 3556406 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3556465
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| ||
Sbjct 3556466 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 3556525
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | ||| ||
Sbjct 3556526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3556585
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || ||||| ||||| || || || || |||||||||
Sbjct 3556586 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 3556633
>seq9
Length=4851470
Score = 113 bits (124), Expect = 4e-20
Identities = 332/509 (65%), Gaps = 16/509 (3%)
Strand=Plus/Plus
Query 47070 CCCTGCG-TGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCAC 47128
|||||| | |||| ||||| || |||||| |||||| || | || ||| | |
Sbjct 3450464 CCCTGCCATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTC 3450523
Query 47129 TCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT 47188
| ||| | ||| || | || || ||| || ||||| |||||||| || ||
Sbjct 3450524 CTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTT 3450583
Query 47189 TGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGA 47248
||| | || |||| | || | || | |||||||| || || || ||||||
Sbjct 3450584 TGCCTCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGA 3450643
Query 47249 GCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AACA 47304
||| ||||| | ||||| || ||||||||| |||||||||| |||| ||| | |
Sbjct 3450644 GCTCATCTCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTACTCTCACCT 3450703
Query 47305 CTAGAGTCGATCAAA--AGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGT 47362
| || || | || || || | | | || ||||| | | || |||||
Sbjct 3450704 CAAGCACCGCCCCAACAAGCAGGTCAT--------TGAG-GACATCATCGTTGATGCCGT 3450754
Query 47363 CGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGC 47422
| |||||| |||||| || | |||||||||||| || | | || |||||| |
Sbjct 3450755 CAAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTC 3450814
Query 47423 GGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTA 47482
| |||||| ||||||| || || || ||||||||||| || || || |
Sbjct 3450815 CAACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAA 3450874
Query 47483 TCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGG 47542
|||| | ||| | || || || ||||| || ||| | ||||| || || | ||
Sbjct 3450875 CGACAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGG 3450934
Query 47543 CAAGACCAACTTTTTCGAGAAGCGCGTCG 47571
|||||||||||| || |||||||| ||||
Sbjct 3450935 CAAGACCAACTTCTTTGAGAAGCGTGTCG 3450963
>seq14
Length=3529981
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || |||||| |||||
Sbjct 714226 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 714167
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 714166 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 714107
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | |||||| || | ||| | || || || ||||| || || || |||
Sbjct 714106 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 714047
Query 127106 ATCTGCA 127112
|||||
Sbjct 714046 --CTGCA 714042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500597912160
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