Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq6 147 3e-30
seq9 118 1e-21
seq8 96.9 4e-15
>seq6
Length=6290098
Score = 147 bits (162), Expect = 3e-30
Identities = 1134/1815 (62%), Gaps = 73/1815 (4%)
Strand=Plus/Plus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
|| ||||||||||| ||||||||||| || |||||||| | | ||||| ||
Sbjct 2838193 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTG 2838252
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677
| |||| | ||| || | |||| || ||| | ||||| || |||||||||
Sbjct 2838253 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAG 2838312
Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734
|| || || || ||||| | || || | | || | || ||||| || ||
Sbjct 2838313 GCACCACGGTCGGCAGCCATCTGAA---CAACGGTGCGCTGGGAGATCTCCCAAACGGTC 2838369
Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794
|||| || ||| | ||| | || || | ||| || |||||||| ||| |
Sbjct 2838370 TTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA---ACCGTTC 2838426
Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851
| | | |||| | | |||||| | | ||||| || || || | |||||||| |
Sbjct 2838427 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 2838486
Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907
| | ||| | |||||||| ||||| || || || || | | |||||
Sbjct 2838487 AACAACCAGGGG----TTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGAT 2838542
Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967
||||| ||||| ||||| |||||||| ||||| |||||||| || | |||||||| ||
Sbjct 2838543 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 2838602
Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027
|||||||| || | ||| | |||||||| | ||| | || | || | ||||| ||
Sbjct 2838603 AGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 2838662
Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC 116087
| |||||| || || | | || | | |||||| || |||||||||||||
Sbjct 2838663 TGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACC 2838722
Query 116088 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 116147
||||| || || ||||| | || || | |||||| ||| |||| | ||
Sbjct 2838723 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCA--GCTGA 2838780
Query 116148 GCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 116205
| | | | || || ||||| || || ||||| || || || | | |
Sbjct 2838781 ACAGACATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG 2838840
Query 116206 GCCTCGTCGGAATC-AAACGC--GAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262
||||| || || ||| || | || || | || |||| || ||||| |||
Sbjct 2838841 GCCTCAGGAGACTCGAAAGGCATGCGAAGG---GCGAGGAAAGCATCAGCAAGACCCTGG 2838897
Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGA 116319
||||| || ||||| ||||| || | ||| || || ||||| ||| |||||
Sbjct 2838898 ACACCAAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGG 2838954
Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379
|| || ||| || | | | || | || || |||| || | || |||
Sbjct 2838955 TAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGA 2839014
Query 116380 AGCTTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435
||||| | | | || | | | || | | ||| || | | || || || |
Sbjct 2839015 AGCTTCTGGAAGTCGTAGACACCATCG-TTGTAGTCA---ACGAAGGTGGGCAGAGCAAG 2839070
Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495
|| |||| || || |||| | |||||| | |||||| || || || || ||
Sbjct 2839071 GGAAGCCAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCA 2839130
Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555
| || || || || || || | |||||| || || ||| ||| |||||
Sbjct 2839131 AAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 2839190
Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614
|||||| ||||| | || | || ||||| || || | || ||| || || | ||| |
Sbjct 2839191 CTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAG 2839250
Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGT 116668
| || | | || | ||| ||| || |||| |||| ||||||||| ||
Sbjct 2839251 CTTCTGGGCCTTG----ATGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTCTCGT 2839303
Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727
| | |||||| ||||| || ||| ||| || | || || || || || || ||
Sbjct 2839304 ACAAGGCCTCGAACTCCTC-GCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCAC 2839362
Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787
| ||| | ||| | | || ||| || | ||||||||| || || |||||||||||
Sbjct 2839363 ATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGA 2839422
Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847
|| ||| || || || || | || || | || || || ||||| ||||
Sbjct 2839423 GCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATG 2839482
Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTG 116901
|| || | || || ||||||||||| || ||||| | |||| | || ||||
Sbjct 2839483 AACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTG 2839542
Query 116902 CGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961
||| |||||| || || | || || |||||| || |||||||| ||||||
Sbjct 2839543 ---TTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATG 2839599
Query 116962 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGG 117021
| ||| | || ||| || || || |||| || |||| | | | |||
Sbjct 2839600 ACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGA 2839659
Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081
|| | |||||| || || ||| ||| ||||| ||||| | |||| || ||
Sbjct 2839660 GCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCG 2839719
Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141
||||| || || || ||||| |||| | ||| ||||||||| |||| || |
Sbjct 2839720 TAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCAC 2839779
Query 117142 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACA 117199
|| ||||||||||||||||| || || | || ||| ||| | | |||| |||||
Sbjct 2839780 TGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACA 2839837
Query 117200 TCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCC 117259
| | ||||||||| | ||| | || || || || |||| || || |
Sbjct 2839838 TGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACAC 2839897
Query 117260 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCT 117319
|||| | ||||| |||||| | || | | ||||| ||| | | |||||
Sbjct 2839898 GCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATC 2839957
Query 117320 TCTCCAAGGTCTTGA 117334
|||||| ||||||||
Sbjct 2839958 TCTCCAGGGTCTTGA 2839972
>seq9
Length=4851470
Score = 118 bits (130), Expect = 1e-21
Identities = 305/462 (66%), Gaps = 22/462 (5%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| |||| |||||||| |||||||| ||||| || | ||| ||| ||||||||
Sbjct 3450971 GTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 3450912
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| || || ||||| || || | | |||| | || | | |||||
Sbjct 3450911 GAAGTCGAAGGGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AGGAGG 3450854
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
|| || | ||| |||||||||||| |||| | |||||||| |||| ||
Sbjct 3450853 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 3450794
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || || || || || |||| ||| |||||| | || || || | |||| |
Sbjct 3450793 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 3450734
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG---- 127520
| ||| || | | | ||| | ||||| ||||| | | ||
Sbjct 3450733 TCAATGA--------CCTGCT-TGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAG 3450683
Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
|||| || ||| ||||||||||||||||||||||| || || |||||| ||||||
Sbjct 3450682 GCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCG 3450623
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
|||||||| || |||||||| | ||| || || | ||| | || |||||||||
Sbjct 3450622 GGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATA 3450563
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681
||||| ||| || || |||| ||||||| ||| ||||||
Sbjct 3450562 CCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 3450521
>seq8
Length=5005225
Score = 96.9 bits (106), Expect = 4e-15
Identities = 271/409 (66%), Gaps = 13/409 (3%)
Strand=Plus/Minus
Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764
|| || || || || || | || || | ||||||||| || | ||| || | |||
Sbjct 2270179 TCGAAACGGCCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 2270120
Query 12765 ATGACAACGA--TGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822
| |||||| | ||| | || | | | ||| || |||||||| ||||||| || || |
Sbjct 2270119 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 2270062
Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 12878
||| ||| || || || || | ||| | |||| | ||| ||| | |||
Sbjct 2270061 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 2270003
Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938
| |||||| || || || ||||| | ||| || || | | | ||||||| ||||
Sbjct 2270002 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTACGGGCATTCGCAAAC 2269943
Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGG 12996
| ||||||||||| | ||||||||| ||||||||||| ||||| | || | || |
Sbjct 2269942 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 2269883
Query 12997 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056
| | || |||||| || || || || ||| |||| ||| || | ||||| |
Sbjct 2269882 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAACGTCTTAC 2269825
Query 13057 CCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105
| || ||||| || || || | ||| ||||| |||||| | || ||
Sbjct 2269824 CGGTTCCTGGAGGTCCGGCAAGGATGGCGCCACGAGGGATCTTTGCGCC 2269776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506939259440
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