Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 147 3e-30 seq9 118 1e-21 seq8 96.9 4e-15 >seq6 Length=6290098 Score = 147 bits (162), Expect = 3e-30 Identities = 1134/1815 (62%), Gaps = 73/1815 (4%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| ||||||||||| || |||||||| | | ||||| || Sbjct 2838193 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTG 2838252 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | ||| || | |||| || ||| | ||||| || ||||||||| Sbjct 2838253 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAG 2838312 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734 || || || || ||||| | || || | | || | || ||||| || || Sbjct 2838313 GCACCACGGTCGGCAGCCATCTGAA---CAACGGTGCGCTGGGAGATCTCCCAAACGGTC 2838369 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| || ||| | ||| | || || | ||| || |||||||| ||| | Sbjct 2838370 TTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA---ACCGTTC 2838426 Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 | | | |||| | | |||||| | | ||||| || || || | |||||||| | Sbjct 2838427 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 2838486 Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907 | | ||| | |||||||| ||||| || || || || | | ||||| Sbjct 2838487 AACAACCAGGGG----TTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGAT 2838542 Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 ||||| ||||| ||||| |||||||| ||||| |||||||| || | |||||||| || Sbjct 2838543 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 2838602 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027 |||||||| || | ||| | |||||||| | ||| | || | || | ||||| || Sbjct 2838603 AGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 2838662 Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC 116087 | |||||| || || | | || | | |||||| || ||||||||||||| Sbjct 2838663 TGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACC 2838722 Query 116088 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 116147 ||||| || || ||||| | || || | |||||| ||| |||| | || Sbjct 2838723 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCA--GCTGA 2838780 Query 116148 GCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 116205 | | | | || || ||||| || || ||||| || || || | | | Sbjct 2838781 ACAGACATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG 2838840 Query 116206 GCCTCGTCGGAATC-AAACGC--GAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 ||||| || || ||| || | || || | || |||| || ||||| ||| Sbjct 2838841 GCCTCAGGAGACTCGAAAGGCATGCGAAGG---GCGAGGAAAGCATCAGCAAGACCCTGG 2838897 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGA 116319 ||||| || ||||| ||||| || | ||| || || ||||| ||| ||||| Sbjct 2838898 ACACCAAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGG 2838954 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || || ||| || | | | || | || || |||| || | || ||| Sbjct 2838955 TAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGA 2839014 Query 116380 AGCTTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 ||||| | | | || | | | || | | ||| || | | || || || | Sbjct 2839015 AGCTTCTGGAAGTCGTAGACACCATCG-TTGTAGTCA---ACGAAGGTGGGCAGAGCAAG 2839070 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || |||| || || |||| | |||||| | |||||| || || || || || Sbjct 2839071 GGAAGCCAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCA 2839130 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 | || || || || || || | |||||| || || ||| ||| ||||| Sbjct 2839131 AAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 2839190 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614 |||||| ||||| | || | || ||||| || || | || ||| || || | ||| | Sbjct 2839191 CTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAG 2839250 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGT 116668 | || | | || | ||| ||| || |||| |||| ||||||||| || Sbjct 2839251 CTTCTGGGCCTTG----ATGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTCTCGT 2839303 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 | | |||||| ||||| || ||| ||| || | || || || || || || || Sbjct 2839304 ACAAGGCCTCGAACTCCTC-GCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCAC 2839362 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 | ||| | ||| | | || ||| || | ||||||||| || || ||||||||||| Sbjct 2839363 ATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGA 2839422 Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847 || ||| || || || || | || || | || || || ||||| |||| Sbjct 2839423 GCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATG 2839482 Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTG 116901 || || | || || ||||||||||| || ||||| | |||| | || |||| Sbjct 2839483 AACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTG 2839542 Query 116902 CGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 ||| |||||| || || | || || |||||| || |||||||| |||||| Sbjct 2839543 ---TTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATG 2839599 Query 116962 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGG 117021 | ||| | || ||| || || || |||| || |||| | | | ||| Sbjct 2839600 ACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGA 2839659 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 || | |||||| || || ||| ||| ||||| ||||| | |||| || || Sbjct 2839660 GCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCG 2839719 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141 ||||| || || || ||||| |||| | ||| ||||||||| |||| || | Sbjct 2839720 TAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCAC 2839779 Query 117142 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACA 117199 || ||||||||||||||||| || || | || ||| ||| | | |||| ||||| Sbjct 2839780 TGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACA 2839837 Query 117200 TCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCC 117259 | | ||||||||| | ||| | || || || || |||| || || | Sbjct 2839838 TGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACAC 2839897 Query 117260 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCT 117319 |||| | ||||| |||||| | || | | ||||| ||| | | ||||| Sbjct 2839898 GCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATC 2839957 Query 117320 TCTCCAAGGTCTTGA 117334 |||||| |||||||| Sbjct 2839958 TCTCCAGGGTCTTGA 2839972 >seq9 Length=4851470 Score = 118 bits (130), Expect = 1e-21 Identities = 305/462 (66%), Gaps = 22/462 (5%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| |||| |||||||| |||||||| ||||| || | ||| ||| |||||||| Sbjct 3450971 GTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 3450912 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| || || | | |||| | || | | ||||| Sbjct 3450911 GAAGTCGAAGGGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AGGAGG 3450854 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||||||||||| |||| | |||||||| |||| || Sbjct 3450853 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 3450794 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || || |||| ||| |||||| | || || || | |||| | Sbjct 3450793 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 3450734 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG---- 127520 | ||| || | | | ||| | ||||| ||||| | | || Sbjct 3450733 TCAATGA--------CCTGCT-TGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAG 3450683 Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 |||| || ||| ||||||||||||||||||||||| || || |||||| |||||| Sbjct 3450682 GCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCG 3450623 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | ||| || || | ||| | || ||||||||| Sbjct 3450622 GGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATA 3450563 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 ||||| ||| || || |||| ||||||| ||| |||||| Sbjct 3450562 CCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 3450521 >seq8 Length=5005225 Score = 96.9 bits (106), Expect = 4e-15 Identities = 271/409 (66%), Gaps = 13/409 (3%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || || || || || | || || | ||||||||| || | ||| || | ||| Sbjct 2270179 TCGAAACGGCCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 2270120 Query 12765 ATGACAACGA--TGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 | |||||| | ||| | || | | | ||| || |||||||| ||||||| || || | Sbjct 2270119 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 2270062 Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 12878 ||| ||| || || || || | ||| | |||| | ||| ||| | ||| Sbjct 2270061 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 2270003 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938 | |||||| || || || ||||| | ||| || || | | | ||||||| |||| Sbjct 2270002 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTACGGGCATTCGCAAAC 2269943 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGG 12996 | ||||||||||| | ||||||||| ||||||||||| ||||| | || | || | Sbjct 2269942 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 2269883 Query 12997 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056 | | || |||||| || || || || ||| |||| ||| || | ||||| | Sbjct 2269882 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAACGTCTTAC 2269825 Query 13057 CCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || ||||| || || || | ||| ||||| |||||| | || || Sbjct 2269824 CGGTTCCTGGAGGTCCGGCAAGGATGGCGCCACGAGGGATCTTTGCGCC 2269776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506939259440