Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq9 158 2e-33
seq6 131 3e-25
>seq9
Length=4851470
Score = 158 bits (174), Expect = 2e-33
Identities = 169/222 (76%), Gaps = 1/222 (0%)
Strand=Plus/Minus
Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974
||| |||||| ||||||||| |||||| |||||||| || ||||||| ||||||||| |
Sbjct 3450693 ACAAGAGGCAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGA 3450634
Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034
| | || || ||||||| |||||| ||||||||||| |||| |||||||||||||
Sbjct 3450633 AGGTCAGACCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGC 3450574
Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094
| || ||||| ||||| || || ||||| || || || | || | || |||| |||
Sbjct 3450573 TGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCT 3450514
Query 160095 TGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA 160136
|| | ||||| | |||||| ||||||||| ||||||
Sbjct 3450513 CATCGCTGATCCACTTCAGGGCCCAGTCAGCCTTC-TTGCGA 3450473
>seq6
Length=6290098
Score = 131 bits (144), Expect = 3e-25
Identities = 424/640 (66%), Gaps = 19/640 (3%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTAC 203893
||||| || || ||||||||||| | | | | || |||||| | | ||| ||||||
Sbjct 2838148 TCTTGGTCGACGGTGAACTGAATAGGGG---CAGAAGCTGCCTGCGTACGCAGGTAGTAC 2838204
Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953
||||| ||||| || || || ||| ||| | |||||| | | |||| ||
Sbjct 2838205 ATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTGCCCATT 2838264
Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012
| ||||| |||||| ||||| || |||||| ||||||||||| ||| || || ||
Sbjct 2838265 GTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAA-GGCACCACGGTC 2838323
Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072
|| ||||| | | || ||| ||| || |||||||| || |||||| ||| | |
Sbjct 2838324 GGCAGCCATCTGAACAACGGTGCGCTGGGAGATCTCCCAAACGGTCTTGTACAGAGCCTT 2838383
Query 204073 GGTGTGTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC 204130
| | | || | || || | || ||| || || ||||| ||||| || | |
Sbjct 2838384 GACCTCA-GCGGGA-ATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGG 2838441
Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190
|| || | | || ||||| ||||| || || ||| || || |||||||
Sbjct 2838442 TTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTG 2838501
Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250
| | ||| || || |||| || || | || | | | |||| |||| | || |||
Sbjct 2838502 ACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGCTCG 2838561
Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310
|| |||||||||||| || ||||| | ||| ||| || ||||||||||| | ||||
Sbjct 2838562 AAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGC 2838621
Query 204311 AGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCAT 204369
| |||||||||||||| | | || |||| |||||| ||| ||| || |
Sbjct 2838622 AAACTGTTGCGCACACCGTGCTCCTTGA-TCTGCTCCTTCAGTGAGTCCCAATCCCAGAG 2838680
Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429
|| ||| || || |||||||||| |||| | ||| || || || ||| |||
Sbjct 2838681 GTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAGCC 2838740
Query 204430 CTTGTACGTCGGATAAGGCTG--ATCCTCTTCTGCCAGCT 204467
|| |||||| ||| ||| || ||||| | |||||||
Sbjct 2838741 CTCGTACGT-GGAGTAGG-TGCCCTCCTCCTTGGCCAGCT 2838778
Score = 109 bits (120), Expect = 9e-19
Identities = 331/495 (67%), Gaps = 16/495 (3%)
Strand=Plus/Plus
Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCT 205164
||| || || || | ||||| ||||| || | ||| || | ||| ||| || ||
Sbjct 2839338 CAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAG-TCGG--CGTTCTTCTCGACTCT 2839394
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|| ||| ||||| ||| |||||| || || || || |||||||| | | | ||
Sbjct 2839395 CTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTC 2839454
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283
| ||| ||||||| |||||||| || || | | |||||||||||||||||| |
Sbjct 2839455 CTTGCCATGGTTCTTGCGCAAGTCCATG-AACTCGAAGACGTCGGCGTGCCACGGCTCAA 2839513
Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343
| | || | ||||| || | |||||| ||||||||||| || ||||| |
Sbjct 2839514 GGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGT 2839573
Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403
||| || || || ||||| || | | |||||| | ||| ||||| |||| | ||
Sbjct 2839574 TGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATAT 2839633
Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCG-CCAATCCCGCCAGAACACTTGGCG 205462
||||| || | | || || | | | ||||| || |||| ||||| |
Sbjct 2839634 AGGAGCCAGTGGCAC-GAATACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAG 2839692
Query 205463 ATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT 205521
||| |||||| ||||| || ||| |||||| || | || || || ||| || |||
Sbjct 2839693 ATCATGGCGCAGGTCTTG-AGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCA-TGT 2839750
Query 205522 C-ACCAGATAGCACGAAGCCAGCTTGGCAAAG-TTGGTGCCCGCGTGGAAGAGCGTGGGG 205579
| || || |||| |||| |||| ||||| | ||| || |||| |||||| ||||||
Sbjct 2839751 CGACGAGGAAGCATGAAGACAGC-TGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGG 2839809
Query 205580 CTGGCGTGGCTGAAG 205594
||| ||| |||||
Sbjct 2839810 GAGGCATGGGTGAAG 2839824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154862059040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |