Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9 158 2e-33 seq6 131 3e-25 >seq9 Length=4851470 Score = 158 bits (174), Expect = 2e-33 Identities = 169/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 ||| |||||| ||||||||| |||||| |||||||| || ||||||| ||||||||| | Sbjct 3450693 ACAAGAGGCAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGA 3450634 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | | || || ||||||| |||||| ||||||||||| |||| ||||||||||||| Sbjct 3450633 AGGTCAGACCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGC 3450574 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094 | || ||||| ||||| || || ||||| || || || | || | || |||| ||| Sbjct 3450573 TGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCT 3450514 Query 160095 TGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA 160136 || | ||||| | |||||| ||||||||| |||||| Sbjct 3450513 CATCGCTGATCCACTTCAGGGCCCAGTCAGCCTTC-TTGCGA 3450473 >seq6 Length=6290098 Score = 131 bits (144), Expect = 3e-25 Identities = 424/640 (66%), Gaps = 19/640 (3%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTAC 203893 ||||| || || ||||||||||| | | | | || |||||| | | ||| |||||| Sbjct 2838148 TCTTGGTCGACGGTGAACTGAATAGGGG---CAGAAGCTGCCTGCGTACGCAGGTAGTAC 2838204 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 ||||| ||||| || || || ||| ||| | |||||| | | |||| || Sbjct 2838205 ATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTGCCCATT 2838264 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012 | ||||| |||||| ||||| || |||||| ||||||||||| ||| || || || Sbjct 2838265 GTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAA-GGCACCACGGTC 2838323 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| | | || ||| ||| || |||||||| || |||||| ||| | | Sbjct 2838324 GGCAGCCATCTGAACAACGGTGCGCTGGGAGATCTCCCAAACGGTCTTGTACAGAGCCTT 2838383 Query 204073 GGTGTGTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC 204130 | | | || | || || | || ||| || || ||||| ||||| || | | Sbjct 2838384 GACCTCA-GCGGGA-ATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGG 2838441 Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || || | | || ||||| ||||| || || ||| || || ||||||| Sbjct 2838442 TTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTG 2838501 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | | ||| || || |||| || || | || | | | |||| |||| | || ||| Sbjct 2838502 ACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGCTCG 2838561 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || |||||||||||| || ||||| | ||| ||| || ||||||||||| | |||| Sbjct 2838562 AAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGC 2838621 Query 204311 AGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCAT 204369 | |||||||||||||| | | || |||| |||||| ||| ||| || | Sbjct 2838622 AAACTGTTGCGCACACCGTGCTCCTTGA-TCTGCTCCTTCAGTGAGTCCCAATCCCAGAG 2838680 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429 || ||| || || |||||||||| |||| | ||| || || || ||| ||| Sbjct 2838681 GTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAGCC 2838740 Query 204430 CTTGTACGTCGGATAAGGCTG--ATCCTCTTCTGCCAGCT 204467 || |||||| ||| ||| || ||||| | ||||||| Sbjct 2838741 CTCGTACGT-GGAGTAGG-TGCCCTCCTCCTTGGCCAGCT 2838778 Score = 109 bits (120), Expect = 9e-19 Identities = 331/495 (67%), Gaps = 16/495 (3%) Strand=Plus/Plus Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCT 205164 ||| || || || | ||||| ||||| || | ||| || | ||| ||| || || Sbjct 2839338 CAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAG-TCGG--CGTTCTTCTCGACTCT 2839394 Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| ||||| ||| |||||| || || || || |||||||| | | | || Sbjct 2839395 CTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTC 2839454 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | ||| ||||||| |||||||| || || | | |||||||||||||||||| | Sbjct 2839455 CTTGCCATGGTTCTTGCGCAAGTCCATG-AACTCGAAGACGTCGGCGTGCCACGGCTCAA 2839513 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | || | ||||| || | |||||| ||||||||||| || ||||| | Sbjct 2839514 GGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGT 2839573 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||| || || || ||||| || | | |||||| | ||| ||||| |||| | || Sbjct 2839574 TGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATAT 2839633 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCG-CCAATCCCGCCAGAACACTTGGCG 205462 ||||| || | | || || | | | ||||| || |||| ||||| | Sbjct 2839634 AGGAGCCAGTGGCAC-GAATACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAG 2839692 Query 205463 ATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT 205521 ||| |||||| ||||| || ||| |||||| || | || || || ||| || ||| Sbjct 2839693 ATCATGGCGCAGGTCTTG-AGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCA-TGT 2839750 Query 205522 C-ACCAGATAGCACGAAGCCAGCTTGGCAAAG-TTGGTGCCCGCGTGGAAGAGCGTGGGG 205579 | || || |||| |||| |||| ||||| | ||| || |||| |||||| |||||| Sbjct 2839751 CGACGAGGAAGCATGAAGACAGC-TGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGG 2839809 Query 205580 CTGGCGTGGCTGAAG 205594 ||| ||| ||||| Sbjct 2839810 GAGGCATGGGTGAAG 2839824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154862059040