Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 132 1e-25 seq10 123 6e-23 seq14 86.0 1e-11 >seq6 Length=6290098 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || ||||| |||||||| || | |||||| || | ||| || Sbjct 607603 CGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTA 607544 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||||||||||||||| | ||||||||||| ||| ||| || Sbjct 607543 CGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCC 607484 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| || | |||||||| | ||| || || | | Sbjct 607483 TCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGC 607424 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || ||||| || Sbjct 607423 GTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTG 607386 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || ||||| || || ||||| |||| |||||| || || ||| Sbjct 607831 CGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTG 607772 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||||||||| |||||||| |||||||||||||| || ||| || Sbjct 607771 CGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCC 607712 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | ||||| | || || || ||||| Sbjct 607711 TCCTTGTCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAAT 607652 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || || || || Sbjct 607651 GTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTG 607614 Score = 102 bits (112), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| |||||||| |||| ||||||||| | | || Sbjct 607089 CGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 607030 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || ||||| |||||||||||||| || || ||| || Sbjct 607029 CGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCC 606970 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | ||| || | | || || || | Sbjct 606969 TCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTCGACCTCGAGA 606910 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 606909 GTGATGGTCTTGCCGGTGA 606891 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||| || |||||||| || | ||||||||| | || || Sbjct 607375 CGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 607316 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || || ||||| | |||||||||||| || || || Sbjct 607315 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCC 607256 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| ||| || | | || || || | Sbjct 607255 TCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGG 607196 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || ||||| || || || Sbjct 607195 GTGATGGTCTTGCCAGTGAGCGTCTTGAC 607167 >seq10 Length=4416304 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || |||||||| |||| ||||||||| | | || Sbjct 3556412 CGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 3556471 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||||||||||||||| || ||||||||||| || ||| || Sbjct 3556472 CGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCC 3556531 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 3556532 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGG 3556591 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || || || || Sbjct 3556592 GTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTG 3556629 >seq14 Length=3529981 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| || ||||||| Sbjct 714228 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 714169 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || || || || ||||| ||||| ||| || | Sbjct 714168 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 714109 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | || || ||||||||||| || || ||||| | Sbjct 714108 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 714049 Query 199620 AA 199621 || Sbjct 714048 AA 714047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921086432278