Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq10 158 1e-33
seq14 122 1e-22
seq6 114 1e-20
>seq10
Length=4416304
Score = 158 bits (174), Expect = 1e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||| ||||| ||||||||||| || ||||| ||
Sbjct 3556418 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 3556477
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||| |||||||| |||| |||||||||||||| || | || |||||||
Sbjct 3556478 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTG 3556537
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| ||| ||||| || | |||||
Sbjct 3556538 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 3556597
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||||||||| || || || ||||| |||||
Sbjct 3556598 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632
>seq14
Length=3529981
Score = 122 bits (134), Expect = 1e-22
Identities = 144/194 (74%), Gaps = 1/194 (1%)
Strand=Plus/Minus
Query 46392 GCAATGT-ACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGC 46450
|||||| ||| |||| ||||| ||||||||||| || ||||| | || || ||||||
Sbjct 714241 GCAATGAGACTAACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 714182
Query 46451 TTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510
||||| ||||| |||| |||||||||||| | || | || |||||||||| ||||||
Sbjct 714181 TTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 714122
Query 46511 TTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC 46570
||||| | | | ||||||| || || || || | || ||||| || ||||||
Sbjct 714121 GACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTC 714062
Query 46571 AGCGTTTTAACAAA 46584
|| || || || ||
Sbjct 714061 AGGGTCTTCACGAA 714048
>seq6
Length=6290098
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| || ||||||| || |||||| || || ||||| || || | || || |
Sbjct 607598 ACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTACGACC 607539
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||| |||||||| ||||||||||||||||||| || | || ||||||
Sbjct 607538 ATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTT 607479
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|| ||||||| ||||| ||| | | | ||||| ||||| || || | ||| |
Sbjct 607478 ATCTTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAA 607420
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || ||||| || || || || || || || |||||
Sbjct 607419 TCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 100 bits (110), Expect = 3e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| |||||
Sbjct 607060 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 607001
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
|| | |||||||| |||| || | || |||||||||| ||||||
Sbjct 607000 AATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 606953
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||| | ||| |||||| || || ||||||||||| || ||||| | || ||
Sbjct 607363 ACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 607304
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| |||||||| || || ||||| ||||||||||| | || | || |||||| |||
Sbjct 607303 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGA 607244
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| ||||| | | | || || || || || || | |||||||| |||
Sbjct 607243 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 607184
Query 46565 CCCGTCAGCGTTTTAAC 46581
|| || ||||| || ||
Sbjct 607183 CCAGTGAGCGTCTTGAC 607167
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || ||||| ||||| ||||| ||| |||||||| | || ||
Sbjct 607819 ACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCC 607760
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| || | ||||||||||| | || | | |||||||||| |
Sbjct 607759 AGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 607700
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||| | | | | |||||| || || || |||| || || || ||
Sbjct 607699 ATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTT 607640
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||||||| || || ||||| |||||
Sbjct 607639 CCAGTCAGCGTCTTGACGAAGATCTGCAT 607611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238159773680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |