Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq10 158 1e-33 seq14 122 1e-22 seq6 114 1e-20 >seq10 Length=4416304 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||| ||||| ||||||||||| || ||||| || Sbjct 3556418 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 3556477 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| |||||||| |||| |||||||||||||| || | || ||||||| Sbjct 3556478 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTG 3556537 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | |||||| ||| ||||| || | ||||| Sbjct 3556538 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 3556597 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || || || ||||| ||||| Sbjct 3556598 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632 >seq14 Length=3529981 Score = 122 bits (134), Expect = 1e-22 Identities = 144/194 (74%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 46392 GCAATGT-ACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGC 46450 |||||| ||| |||| ||||| ||||||||||| || ||||| | || || |||||| Sbjct 714241 GCAATGAGACTAACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 714182 Query 46451 TTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510 ||||| ||||| |||| |||||||||||| | || | || |||||||||| |||||| Sbjct 714181 TTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 714122 Query 46511 TTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC 46570 ||||| | | | ||||||| || || || || | || ||||| || |||||| Sbjct 714121 GACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTC 714062 Query 46571 AGCGTTTTAACAAA 46584 || || || || || Sbjct 714061 AGGGTCTTCACGAA 714048 >seq6 Length=6290098 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || ||||||| || |||||| || || ||||| || || | || || | Sbjct 607598 ACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTACGACC 607539 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| ||||||||||||||||||| || | || |||||| Sbjct 607538 ATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTT 607479 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 || ||||||| ||||| ||| | | | ||||| ||||| || || | ||| | Sbjct 607478 ATCTTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAA 607420 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || || || || || || || ||||| Sbjct 607419 TCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 607060 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 607001 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 || | |||||||| |||| || | || |||||||||| |||||| Sbjct 607000 AATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 606953 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| |||||| || || ||||||||||| || ||||| | || || Sbjct 607363 ACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 607304 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||| || || ||||| ||||||||||| | || | || |||||| ||| Sbjct 607303 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGA 607244 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||||| | | | || || || || || || | |||||||| ||| Sbjct 607243 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 607184 Query 46565 CCCGTCAGCGTTTTAAC 46581 || || ||||| || || Sbjct 607183 CCAGTGAGCGTCTTGAC 607167 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || ||||| ||||| ||||| ||| |||||||| | || || Sbjct 607819 ACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCC 607760 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| || | ||||||||||| | || | | |||||||||| | Sbjct 607759 AGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 607700 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | |||||| || || || |||| || || || || Sbjct 607699 ATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTT 607640 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || ||||| ||||| Sbjct 607639 CCAGTCAGCGTCTTGACGAAGATCTGCAT 607611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238159773680