Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9 152 5e-32 seq6 136 4e-27 seq10 131 2e-25 seq14 105 7e-18 >seq9 Length=4851470 Score = 152 bits (168), Expect = 5e-32 Identities = 325/480 (68%), Gaps = 8/480 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 3450955 TTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 3450896 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||| |||| | | || |||| || || | |||||| |||||||| Sbjct 3450895 GAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAGGCGGTCGGCAACGAACTCA 3450836 Query 132745 ATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGT 132803 ||||| ||| ||| | | | || | || || ||| |||| ||||| || || || Sbjct 3450835 ATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCAG-GGCAGAGCCTCAGT 3450777 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863 ||| || ||||| || ||| || || || ||| ||| || | | | | | Sbjct 3450776 GAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCCTCAATGACCTGCTTGTT 3450717 Query 132864 CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTC 132923 || || ||| | || | ||| | ||| ||||||||| |||| |||||||| Sbjct 3450716 GGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAGTCGGTGTGCAGACCCTCGTC 3450657 Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983 | ||| ||||| |||||| ||| |||| |||||||||||||| || || |||||||| Sbjct 3450656 ACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTTCTTGAGCCA 3450597 Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043 ||| |||| ||| ||| || ||||||| ||||| || || || || || ||||| Sbjct 3450596 AAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAG 3450537 Query 133044 GCGCTCGCCGAACGTGG-CTTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 |||| | |||| | || |||| | ||| |||||| ||| ||||| || ||||| Sbjct 3450536 ACGCTGGGCGAAGGAGGAGTTCTCATCGCT---GATCCACTTCAGGGCCCAGTCAGCCTT 3450480 Score = 149 bits (164), Expect = 6e-31 Identities = 199/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 3450360 GTAGGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 3450301 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || ||||| ||||| || || | ||| ||||||||||| || Sbjct 3450300 GCCGTAGAAGCAGCGAGCCTCAGGGACCTGGACCTCGCCGGAGAAGCGCTCGACCAGGTT 3450241 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || |||||||| ||||| |||||||| ||||| || | ||| |||||| | Sbjct 3450240 CTCATTGACGATACCGTCCGATGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTACTT 3450181 Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||| || | | ||||||| | |||||||| || || | |||||| Sbjct 3450180 CTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTC 3450121 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || |||||||| || |||||||| Sbjct 3450120 GGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 3450085 >seq6 Length=6290098 Score = 136 bits (150), Expect = 4e-27 Identities = 148/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| |||||||| |||| |||||| || |||| | | | | |||| | || Sbjct 606891 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGATAACG-TGAAG 606949 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| |||||| |||| || ||||| ||||||| ||| ||| Sbjct 606950 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 607009 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| ||||||||| ||||||||||||||| ||||| | || || Sbjct 607010 AAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTC 607069 Query 38445 CATTTGGTGCTGCG 38458 || ||||| || || Sbjct 607070 CACTTGGTTCTCCG 607083 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || || || || | || |||||| | | Sbjct 607611 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCT 607670 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || || |||| ||||| ||||| |||||| | ||||| Sbjct 607671 GACACGATTGATAATG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCA 607729 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| || | ||||| || | ||| ||||| Sbjct 607730 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGCGATTACAA 607789 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| |||||| | || || ||| |||| || ||| | | ||||||| Sbjct 607790 CATCCAGAAGGAATCAACCCTCCATCTGGTCCTCCGTCTTCGTGGCGGCC 607839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || |||||||| ||||| ||||||||| | || |||||| | | || | | | Sbjct 607165 TCGTCAAGACGCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 607224 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || || | || || ||||| || ||| | ||||| ||||| | | Sbjct 607225 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGA 607284 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | || ||||| || || || || | |||||||| |||||||||||| || |||| Sbjct 607285 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 607344 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 | | || || |||||||| || ||| Sbjct 607345 AGTCCACACTCCATTTGGTTCTTCGT 607370 >seq10 Length=4416304 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || |||||| | || || ||| | || Sbjct 3556632 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 3556573 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| |||||| ||||||| Sbjct 3556572 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 3556513 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 3556512 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3556453 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| ||||| Sbjct 3556452 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 3556418 >seq14 Length=3529981 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || |||||| | Sbjct 714048 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 714107 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| || Sbjct 714108 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 714167 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| ||| Sbjct 714168 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 714227 Query 38433 G 38433 | Sbjct 714228 G 714228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172587426560