Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq9 152 5e-32
seq6 136 4e-27
seq10 131 2e-25
seq14 105 7e-18
>seq9
Length=4851470
Score = 152 bits (168), Expect = 5e-32
Identities = 325/480 (68%), Gaps = 8/480 (2%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
|||||||| || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 3450955 TTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 3450896
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | |||||| |||| | | || |||| || || | |||||| ||||||||
Sbjct 3450895 GAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAGGCGGTCGGCAACGAACTCA 3450836
Query 132745 ATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGT 132803
||||| ||| ||| | | | || | || || ||| |||| ||||| || || ||
Sbjct 3450835 ATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCAG-GGCAGAGCCTCAGT 3450777
Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863
||| || ||||| || ||| || || || ||| ||| || | | | | |
Sbjct 3450776 GAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCCTCAATGACCTGCTTGTT 3450717
Query 132864 CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTC 132923
|| || ||| | || | ||| | ||| ||||||||| |||| ||||||||
Sbjct 3450716 GGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAGTCGGTGTGCAGACCCTCGTC 3450657
Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983
| ||| ||||| |||||| ||| |||| |||||||||||||| || || ||||||||
Sbjct 3450656 ACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTTCTTGAGCCA 3450597
Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043
||| |||| ||| ||| || ||||||| ||||| || || || || || |||||
Sbjct 3450596 AAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAG 3450537
Query 133044 GCGCTCGCCGAACGTGG-CTTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
|||| | |||| | || |||| | ||| |||||| ||| ||||| || |||||
Sbjct 3450536 ACGCTGGGCGAAGGAGGAGTTCTCATCGCT---GATCCACTTCAGGGCCCAGTCAGCCTT 3450480
Score = 149 bits (164), Expect = 6e-31
Identities = 199/276 (72%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||||||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 3450360 GTAGGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 3450301
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || ||||| ||||| || || | ||| ||||||||||| ||
Sbjct 3450300 GCCGTAGAAGCAGCGAGCCTCAGGGACCTGGACCTCGCCGGAGAAGCGCTCGACCAGGTT 3450241
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|| |||||||| ||||| |||||||| ||||| || | ||| |||||| |
Sbjct 3450240 CTCATTGACGATACCGTCCGATGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTACTT 3450181
Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | |||| || | | ||||||| | |||||||| || || | ||||||
Sbjct 3450180 CTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTC 3450121
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| || || |||||||| || ||||||||
Sbjct 3450120 GGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 3450085
>seq6
Length=6290098
Score = 136 bits (150), Expect = 4e-27
Identities = 148/194 (76%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| |||||||| |||| |||||| || |||| | | | | |||| | ||
Sbjct 606891 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGATAACG-TGAAG 606949
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| |||| ||||| ||||| |||||| |||| || ||||| ||||||| ||| |||
Sbjct 606950 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 607009
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || |||| ||||||||| ||||||||||||||| ||||| | || ||
Sbjct 607010 AAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTC 607069
Query 38445 CATTTGGTGCTGCG 38458
|| ||||| || ||
Sbjct 607070 CACTTGGTTCTCCG 607083
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||||| || || || || || || | || |||||| | |
Sbjct 607611 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCT 607670
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || || | | || || |||| ||||| ||||| |||||| | |||||
Sbjct 607671 GACACGATTGATAATG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCA 607729
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| || || |||||||| || | ||||| || | ||| |||||
Sbjct 607730 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGCGATTACAA 607789
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| |||||| | || || ||| |||| || ||| | | |||||||
Sbjct 607790 CATCCAGAAGGAATCAACCCTCCATCTGGTCCTCCGTCTTCGTGGCGGCC 607839
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || |||||||| ||||| ||||||||| | || |||||| | | || | | |
Sbjct 607165 TCGTCAAGACGCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 607224
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || || | || || ||||| || ||| | ||||| ||||| | |
Sbjct 607225 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGA 607284
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||| || || || || | |||||||| |||||||||||| || ||||
Sbjct 607285 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 607344
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
| | || || |||||||| || |||
Sbjct 607345 AGTCCACACTCCATTTGGTTCTTCGT 607370
>seq10
Length=4416304
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || |||||||| || |||||| | || || ||| | ||
Sbjct 3556632 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 3556573
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| |||||| |||||||
Sbjct 3556572 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 3556513
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| || || ||||| || |||| ||||||||| ||||||||||
Sbjct 3556512 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3556453
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || |||| |||||
Sbjct 3556452 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 3556418
>seq14
Length=3529981
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || |||||| |
Sbjct 714048 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 714107
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||| ||||| ||
Sbjct 714108 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 714167
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| |||
Sbjct 714168 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 714227
Query 38433 G 38433
|
Sbjct 714228 G 714228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172587426560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |