Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq6 257 2e-63
seq17 145 1e-29
>seq6
Length=6290098
Score = 257 bits (284), Expect = 2e-63
Identities = 483/710 (68%), Gaps = 0/710 (0%)
Strand=Plus/Plus
Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081
|||||||| ||||| | || ||||| || || |||||||||||||| || | || ||
Sbjct 3564828 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 3564887
Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141
| || || ||||| || ||||| || | | | || | ||||| || || ||
Sbjct 3564888 GGCTCCTTGCCGTTGAAGTAATCGGAGATGAGCTTCTGGACACGGGGGATACGGGTGGAA 3564947
Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201
|| ||||||| ||||| || | || | || || |||| ||| | ||| ||
Sbjct 3564948 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTGAGGACA 3565007
Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261
||||| || | || ||||||| |||| || || ||||| || || |||
Sbjct 3565008 CGGTCGACGGGCTGGATGGTAGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCA 3565067
Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321
||||| ||||| || ||||| || | || ||| | | || || || || |||| ||
Sbjct 3565068 CGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAACAGGGAGTCGATCTCGATGGAGGTC 3565127
Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381
|| || | ||| || | || ||||| || ||||| || || || || | ||| || |||
Sbjct 3565128 TGGGCAGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGGAGACGGCGCAGG 3565187
Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441
|| || | ||| ||| | || ||||| || || || || ||||| | ||||||
Sbjct 3565188 GCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGG 3565247
Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501
| ||| | ||||| || |||||||||||||| || || || ||||| | |||
Sbjct 3565248 TTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTG 3565307
Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561
|| || || || || | |||||| | || | || ||||| || ||||||||||| |||
Sbjct 3565308 ACCTCGAAAATGCCCTCCTCAATGGTCAAAAGAGACACATCGAAAGTACCACCACCAAGG 3565367
Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621
|| || ||||| ||||| ||| | || ||||| || |||||||| || || ||
Sbjct 3565368 TCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCAAGACCGTAGGCAATGGCG 3565427
Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681
|| || || || || || || |||||||| ||| ||||| ||||| | || ||
Sbjct 3565428 GCAGCGGTAGGCTCGTTGATGATACGAAGGACGTTGAGGCCGGCAATGAGACCGGCGTCC 3565487
Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
|| || || || || || || ||||| |||||||| ||||| || |||||
Sbjct 3565488 TTGGTGGCCTGACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGACGAC 3565537
Score = 134 bits (148), Expect = 2e-26
Identities = 230/331 (69%), Gaps = 11/331 (3%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||||||| || || || ||||| || || || |||| |||
Sbjct 1106044 TCGAAATCCTCACCACCCAAGTGGGTGTCACCGGCGGTAGCCAGAACCTCGAAGACACCC 1105985
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTC---AAAAATGAGT 7573
|| ||| | | |||||||| || ||||||||||| ||||| || |||||
Sbjct 1105984 TGGTCGATGGACAGAAGGGAAACATCGAAAGTACCACCACCAAGGTCGTAAACAATGA-- 1105927
Query 7574 ACGTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632
|| | || || | | | |||| || |||||||| |||||||| || || || ||
Sbjct 1105926 ----TC-TGGCGCTCACCCTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGG 1105872
Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692
|| || | ||| || ||| ||| || || ||||| | ||||| || || || ||
Sbjct 1105871 CTCGTTGACAATGCGGAGAACGTTAAGTCCGGCAATGACACCGGCATCCTTGGTGGCCTG 1105812
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
|| || ||||| |||||||| ||||| || ||||| |||| || || ||||| ||
Sbjct 1105811 GCGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAACGACGGCGTGGGTAACCTTCTTGCC 1105752
Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTG 7783
|| || | || |||| || ||||| |||
Sbjct 1105751 AAGGTAGGCCTCGGCGACCTCCTTCATCTTG 1105721
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
||||||||| ||| | | ||||||||| | ||||||| |||| ||||| |
Sbjct 3565733 GATAACCTTGAACGGGAAGTGCTTCATATCGGCCTGGACCTCGGAGTCCTGGAACTTGCG 3565792
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
|| || |||||||| ||||| || || ||||| | |||||||||||| ||||||||
Sbjct 3565793 GCCAATGAGACGCTTGGCATCGAAGACCGTGTTGTGGGGGTTCATGGCGACCTGGTTCTT 3565852
Query 7996 CGCCGCGTCCCCGATAAGACGTTCA 8020
||||| || ||||| || || |||
Sbjct 3565853 GGCCGCATCTCCGATCAGGCGCTCA 3565877
>seq17
Length=2392175
Score = 145 bits (160), Expect = 1e-29
Identities = 347/521 (67%), Gaps = 13/521 (2%)
Strand=Plus/Plus
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAA 7299
||| ||||| ||||| |||||||| || || || ||| || |||| ||| | |
Sbjct 1493934 CAGGTCCTCGAAACGAGCACGGGTGATCTGGGTGGTGTAG---TCCTCGCCATCGAAGAG 1493990
Query 7300 CGAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357
|| || || |||||||| || || || || | || | || ||||| || |||||
Sbjct 1493991 AGAGTCGATCTCAATGGTGGTCTGGGCACCGCTG--GAAAGGGTACGCTTGGCACGCTCG 1494048
Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417
|| || || || | |||||| |||||||| |||| ||||| | || ||||| ||
Sbjct 1494049 CAAGCAGTGCGGAGACGACGGAGGGCACGGGGGTCGCCGGAGAGGTCCTTCTTGGTCTTG 1494108
Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477
|| | || || | | |||| ||| || | | ||||| || | ||||||||||
Sbjct 1494109 CGCTGGAAGTCCTTCTTGCAGTGGTCAAGAAGGTTGGTGTCGAAGTCCTGACCACCCAAG 1494168
Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537
|| || || || ||||| || ||||| || | ||| || | ||||| | | ||
Sbjct 1494169 TGGGTGTCACCAGCGGTGGCCTTGACGGTGAAAACACCGCCCTGGATGTTAAGGAGGGAG 1494228
Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTG 7594
||||| || ||||||||||||| ||| | ||||| ||||| || | | | |||
Sbjct 1494229 ACATCGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTG 1494288
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
| | |||||||| || || || || || || || || || || ||||| || |
Sbjct 1494289 CCGGCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACG 1494348
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| || || || || | | || || || || || || || || ||||| ||||||
Sbjct 1494349 TTAAGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 1494408
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| || | ||| || | | ||| ||||| || ||
Sbjct 1494409 GCAGGGACGGTGATGACGGCCTTCTCGACCTTCTTGCCAAG 1494449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132530068560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |