Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6 257 2e-63 seq17 145 1e-29 >seq6 Length=6290098 Score = 257 bits (284), Expect = 2e-63 Identities = 483/710 (68%), Gaps = 0/710 (0%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 3564828 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 3564887 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || ||||| || | | | || | ||||| || || || Sbjct 3564888 GGCTCCTTGCCGTTGAAGTAATCGGAGATGAGCTTCTGGACACGGGGGATACGGGTGGAA 3564947 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||||| ||||| || | || | || || |||| ||| | ||| || Sbjct 3564948 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTGAGGACA 3565007 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | || ||||||| |||| || || ||||| || || ||| Sbjct 3565008 CGGTCGACGGGCTGGATGGTAGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCA 3565067 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| || | || ||| | | || || || || |||| || Sbjct 3565068 CGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAACAGGGAGTCGATCTCGATGGAGGTC 3565127 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||| || | || ||||| || ||||| || || || || | ||| || ||| Sbjct 3565128 TGGGCAGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGGAGACGGCGCAGG 3565187 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441 || || | ||| ||| | || ||||| || || || || ||||| | |||||| Sbjct 3565188 GCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGG 3565247 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 | ||| | ||||| || |||||||||||||| || || || ||||| | ||| Sbjct 3565248 TTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTG 3565307 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || || || || | |||||| | || | || ||||| || ||||||||||| ||| Sbjct 3565308 ACCTCGAAAATGCCCTCCTCAATGGTCAAAAGAGACACATCGAAAGTACCACCACCAAGG 3565367 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || ||||| ||||| ||| | || ||||| || |||||||| || || || Sbjct 3565368 TCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCAAGACCGTAGGCAATGGCG 3565427 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 || || || || || || || |||||||| ||| ||||| ||||| | || || Sbjct 3565428 GCAGCGGTAGGCTCGTTGATGATACGAAGGACGTTGAGGCCGGCAATGAGACCGGCGTCC 3565487 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || || || || || || || ||||| |||||||| ||||| || ||||| Sbjct 3565488 TTGGTGGCCTGACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGACGAC 3565537 Score = 134 bits (148), Expect = 2e-26 Identities = 230/331 (69%), Gaps = 11/331 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||| || || || |||| ||| Sbjct 1106044 TCGAAATCCTCACCACCCAAGTGGGTGTCACCGGCGGTAGCCAGAACCTCGAAGACACCC 1105985 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTC---AAAAATGAGT 7573 || ||| | | |||||||| || ||||||||||| ||||| || ||||| Sbjct 1105984 TGGTCGATGGACAGAAGGGAAACATCGAAAGTACCACCACCAAGGTCGTAAACAATGA-- 1105927 Query 7574 ACGTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 || | || || | | | |||| || |||||||| |||||||| || || || || Sbjct 1105926 ----TC-TGGCGCTCACCCTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGG 1105872 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || | ||| || ||| ||| || || ||||| | ||||| || || || || Sbjct 1105871 CTCGTTGACAATGCGGAGAACGTTAAGTCCGGCAATGACACCGGCATCCTTGGTGGCCTG 1105812 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || ||||| |||||||| ||||| || ||||| |||| || || ||||| || Sbjct 1105811 GCGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAACGACGGCGTGGGTAACCTTCTTGCC 1105752 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTG 7783 || || | || |||| || ||||| ||| Sbjct 1105751 AAGGTAGGCCTCGGCGACCTCCTTCATCTTG 1105721 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||||||||| ||| | | ||||||||| | ||||||| |||| ||||| | Sbjct 3565733 GATAACCTTGAACGGGAAGTGCTTCATATCGGCCTGGACCTCGGAGTCCTGGAACTTGCG 3565792 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || |||||||| ||||| || || ||||| | |||||||||||| |||||||| Sbjct 3565793 GCCAATGAGACGCTTGGCATCGAAGACCGTGTTGTGGGGGTTCATGGCGACCTGGTTCTT 3565852 Query 7996 CGCCGCGTCCCCGATAAGACGTTCA 8020 ||||| || ||||| || || ||| Sbjct 3565853 GGCCGCATCTCCGATCAGGCGCTCA 3565877 >seq17 Length=2392175 Score = 145 bits (160), Expect = 1e-29 Identities = 347/521 (67%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAA 7299 ||| ||||| ||||| |||||||| || || || ||| || |||| ||| | | Sbjct 1493934 CAGGTCCTCGAAACGAGCACGGGTGATCTGGGTGGTGTAG---TCCTCGCCATCGAAGAG 1493990 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357 || || || |||||||| || || || || | || | || ||||| || ||||| Sbjct 1493991 AGAGTCGATCTCAATGGTGGTCTGGGCACCGCTG--GAAAGGGTACGCTTGGCACGCTCG 1494048 Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417 || || || || | |||||| |||||||| |||| ||||| | || ||||| || Sbjct 1494049 CAAGCAGTGCGGAGACGACGGAGGGCACGGGGGTCGCCGGAGAGGTCCTTCTTGGTCTTG 1494108 Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || | || || | | |||| ||| || | | ||||| || | |||||||||| Sbjct 1494109 CGCTGGAAGTCCTTCTTGCAGTGGTCAAGAAGGTTGGTGTCGAAGTCCTGACCACCCAAG 1494168 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || ||||| || ||||| || | ||| || | ||||| | | || Sbjct 1494169 TGGGTGTCACCAGCGGTGGCCTTGACGGTGAAAACACCGCCCTGGATGTTAAGGAGGGAG 1494228 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTG 7594 ||||| || ||||||||||||| ||| | ||||| ||||| || | | | ||| Sbjct 1494229 ACATCGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTG 1494288 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | |||||||| || || || || || || || || || || ||||| || | Sbjct 1494289 CCGGCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACG 1494348 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || || || | | || || || || || || || || ||||| |||||| Sbjct 1494349 TTAAGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 1494408 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| || | ||| || | | ||| ||||| || || Sbjct 1494409 GCAGGGACGGTGATGACGGCCTTCTCGACCTTCTTGCCAAG 1494449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132530068560