Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq6 181 1e-40
seq9 127 3e-24
>seq6
Length=6290098
Score = 181 bits (200), Expect = 1e-40
Identities = 892/1400 (64%), Gaps = 45/1400 (3%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTCT 111668
|| ||| ||||| ||||||| || || |||| ||| ||||| |||| | ||
Sbjct 2839916 CCCCAGCACATGATCATGCGTGTTGCAGTCGGCATC--TGGGGT-GATAACGTCGAGCGC 2839860
Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728
|| | ||||| ||| || |||||| | | |||| ||| || | || || |||
Sbjct 2839859 GTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACACTC 2839800
Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788
|||||||||||||| || ||| |||| || ||||| | | | |||||
Sbjct 2839799 TTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 2839740
Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848
|| || || | || || |||| ||| |||| || ||| ||||| ||| ||||
Sbjct 2839739 GACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 2839680
Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908
||||| || || | || || | | | |||| || |||| || ||
Sbjct 2839679 GGTGGCATTGGTCTCAACGCTCACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCACC 2839620
Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968
|| || || | ||| | ||||| |||||||| || |||||| ||| || |||||
Sbjct 2839619 AACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTAC 2839560
Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022
|| |||| | ||| ||||| || || |||| | || |||||||| |||
Sbjct 2839559 GTCGACCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATTTACCTTGAGCCGTGG 2839503
Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082
||||| || || | |||||| | || ||||| ||||| || | ||||||| ||
Sbjct 2839502 CACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGT 2839443
Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142
||| || || ||| |||||||||||| || ||||| |||||||||||||| ||| ||
Sbjct 2839442 GCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAG 2839383
Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGG 112201
| | | | ||| | ||| | || || | || || || || | || ||| | ||
Sbjct 2839382 AACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTAT-GG 2839324
Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAG---AAAGTCGGGCGACTGC 112255
|||||||| || ||| | ||| ||||||||| || | | |||| |||
Sbjct 2839323 CGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCAT 2839264
Query 112256 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315
| || |||| || | ||| | || || ||| || |||| ||||||||||| |
Sbjct 2839263 CAAGG-CCCAGAAGC-----TTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAA 2839210
Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375
|| | ||||||||||| || || |||| ||||| || || ||||| | ||
Sbjct 2839209 CCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAAC 2839150
Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGG 112434
||| || |||||||| || || || ||| | || | | | || |||||| |
Sbjct 2839149 TATCCGCAGCTCCAACCTTTGCACTGAGATCATTGAGTACTGCGCAC-CCGATGAGGTCG 2839091
Query 112435 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACA 112493
|||| || ||| | || || | ||||| |||| | || || | || || | |
Sbjct 2839090 CTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGTTGACTACAACGATGGTGTC- 2839032
Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553
| || | | || || ||||| ||||| | || ||| | |||| |
Sbjct 2839031 TACGACTTCCAGAAGCTTCACGAGGTTACTCAGGTCGTTGTTCGCAACTTGAACAAGATC 2838972
Query 112554 ATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGT 112610
|||||| || ||||||||| ||| ||||| || || ||| | |||||
Sbjct 2838971 ATTGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAACAGCAACATGCGTCACCGC 2838915
Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 112670
|| |||||||| |||||||| ||||| || |||| ||| | ||| || || |||
Sbjct 2838914 CCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTTT 2838856
Query 112671 -GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729
|| || || || || |||| | || || ||||| || || ||||| ||
Sbjct 2838855 CGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGC 2838796
Query 112730 TCTT--GAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787
|||| | | |||| || |||| ||| || || | || || | |||||
Sbjct 2838795 TCTTACCATGTCTGTTC--AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGC 2838738
Query 112788 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC 112847
|| || || || || | || || | || |||||| | | || || | |
Sbjct 2838737 TCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTC 2838678
Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907
| || |||||| | || ||||| | ||||||||| | ||| | || |||||| | |
Sbjct 2838677 TGGGATTGGGACTCACTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTC 2838618
Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967
| || || ||||| || |||||||| | || |||||||| || || || ||||| ||
Sbjct 2838617 GTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAG 2838558
Query 112968 CCCTACACGACGAACATCTA 112987
|||||||| | ||||||||
Sbjct 2838557 CCCTACACCTCCAACATCTA 2838538
>seq9
Length=4851470
Score = 127 bits (140), Expect = 3e-24
Identities = 158/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCGCGTTCCTTT 102176
|||| ||||| || || ||||| |||||||| | ||| || || |||||
Sbjct 3450471 ATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCC---TCCTTC 3450527
Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236
|| |||| || | || ||||| ||||||||||||||||||| ||| | || |
Sbjct 3450528 GCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCC 3450587
Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296
| || | ||||||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct 3450588 TCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTC 3450647
Query 102297 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||| ||||||||||| || ||| || |||||
Sbjct 3450648 ATCTCCCGTGACGAGGGTCTGCACACCGACTTTGC 3450682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742136184480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |