Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 181 1e-40 seq9 127 3e-24 >seq6 Length=6290098 Score = 181 bits (200), Expect = 1e-40 Identities = 892/1400 (64%), Gaps = 45/1400 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTCT 111668 || ||| ||||| ||||||| || || |||| ||| ||||| |||| | || Sbjct 2839916 CCCCAGCACATGATCATGCGTGTTGCAGTCGGCATC--TGGGGT-GATAACGTCGAGCGC 2839860 Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728 || | ||||| ||| || |||||| | | |||| ||| || | || || ||| Sbjct 2839859 GTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACACTC 2839800 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||||||||||| || ||| |||| || ||||| | | | ||||| Sbjct 2839799 TTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 2839740 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || || || | || || |||| ||| |||| || ||| ||||| ||| |||| Sbjct 2839739 GACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 2839680 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 ||||| || || | || || | | | |||| || |||| || || Sbjct 2839679 GGTGGCATTGGTCTCAACGCTCACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCACC 2839620 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | ||| | ||||| |||||||| || |||||| ||| || ||||| Sbjct 2839619 AACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTAC 2839560 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||| | ||| ||||| || || |||| | || |||||||| ||| Sbjct 2839559 GTCGACCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATTTACCTTGAGCCGTGG 2839503 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||||| || || | |||||| | || ||||| ||||| || | ||||||| || Sbjct 2839502 CACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGT 2839443 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| || || ||| |||||||||||| || ||||| |||||||||||||| ||| || Sbjct 2839442 GCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAG 2839383 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGG 112201 | | | | ||| | ||| | || || | || || || || | || ||| | || Sbjct 2839382 AACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTAT-GG 2839324 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAG---AAAGTCGGGCGACTGC 112255 |||||||| || ||| | ||| ||||||||| || | | |||| ||| Sbjct 2839323 CGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCAT 2839264 Query 112256 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 | || |||| || | ||| | || || ||| || |||| ||||||||||| | Sbjct 2839263 CAAGG-CCCAGAAGC-----TTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAA 2839210 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || | ||||||||||| || || |||| ||||| || || ||||| | || Sbjct 2839209 CCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAAC 2839150 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGG 112434 ||| || |||||||| || || || ||| | || | | | || |||||| | Sbjct 2839149 TATCCGCAGCTCCAACCTTTGCACTGAGATCATTGAGTACTGCGCAC-CCGATGAGGTCG 2839091 Query 112435 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACA 112493 |||| || ||| | || || | ||||| |||| | || || | || || | | Sbjct 2839090 CTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGTTGACTACAACGATGGTGTC- 2839032 Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553 | || | | || || ||||| ||||| | || ||| | |||| | Sbjct 2839031 TACGACTTCCAGAAGCTTCACGAGGTTACTCAGGTCGTTGTTCGCAACTTGAACAAGATC 2838972 Query 112554 ATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGT 112610 |||||| || ||||||||| ||| ||||| || || ||| | ||||| Sbjct 2838971 ATTGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAACAGCAACATGCGTCACCGC 2838915 Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 112670 || |||||||| |||||||| ||||| || |||| ||| | ||| || || ||| Sbjct 2838914 CCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTTT 2838856 Query 112671 -GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729 || || || || || |||| | || || ||||| || || ||||| || Sbjct 2838855 CGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGC 2838796 Query 112730 TCTT--GAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787 |||| | | |||| || |||| ||| || || | || || | ||||| Sbjct 2838795 TCTTACCATGTCTGTTC--AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGC 2838738 Query 112788 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC 112847 || || || || || | || || | || |||||| | | || || | | Sbjct 2838737 TCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTC 2838678 Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907 | || |||||| | || ||||| | ||||||||| | ||| | || |||||| | | Sbjct 2838677 TGGGATTGGGACTCACTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTC 2838618 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 | || || ||||| || |||||||| | || |||||||| || || || ||||| || Sbjct 2838617 GTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAG 2838558 Query 112968 CCCTACACGACGAACATCTA 112987 |||||||| | |||||||| Sbjct 2838557 CCCTACACCTCCAACATCTA 2838538 >seq9 Length=4851470 Score = 127 bits (140), Expect = 3e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCGCGTTCCTTT 102176 |||| ||||| || || ||||| |||||||| | ||| || || ||||| Sbjct 3450471 ATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCC---TCCTTC 3450527 Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 || |||| || | || ||||| ||||||||||||||||||| ||| | || | Sbjct 3450528 GCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCC 3450587 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 | || | ||||||||||||||| || |||||||| ||||| ||||||||||||||| Sbjct 3450588 TCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTC 3450647 Query 102297 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||||||||| || ||| || ||||| Sbjct 3450648 ATCTCCCGTGACGAGGGTCTGCACACCGACTTTGC 3450682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742136184480