Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 149 7e-31 seq8 109 6e-19 >seq6 Length=6290098 Score = 149 bits (164), Expect = 7e-31 Identities = 335/498 (67%), Gaps = 14/498 (3%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| || || || || ||||| ||||| ||||||||| |||||| || | ||| Sbjct 2838184 GCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGC 2838243 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | || ||| | |||||| || ||| | ||| | ||||| ||||| Sbjct 2838244 ATACTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGG 2838303 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCC 109575 |||||||| |||||| || || ||||| | | | | | | || || || ||| Sbjct 2838304 TCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCT---GGGAGATCTCC 2838360 Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635 || || |||||||||| | ||||| ||| ||||||||| |||||| || ||||| Sbjct 2838361 CAAACGGTCTTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA- 2838419 Query 109636 CCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTG 109692 ||| || | |||| | | |||||| | | ||||| || || | | | Sbjct 2838420 --ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACG 2838477 Query 109693 AGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 ||||| | |||||| | |||||| || || || || ||||| || || | Sbjct 2838478 AGATCCTTCAACAACCAGGG-GTTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTG 2838536 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | |||||||| ||||| ||||| |||||||| | ||| || | |||||| Sbjct 2838537 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGA 2838596 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871 || || ||||||||||| | ||| | |||||| || | ||| | | ||| | | |||| Sbjct 2838597 GGCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTC 2838656 Query 109872 ACGCATTGCGTCCCAATC 109889 || || ||||||||| Sbjct 2838657 CTTCAGTGAGTCCCAATC 2838674 Score = 143 bits (158), Expect = 3e-29 Identities = 545/842 (65%), Gaps = 35/842 (4%) Strand=Plus/Plus Query 110379 GTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438 ||||||||| || ||| |||| |||||||| || |||||| | ||| | ||||| Sbjct 2839158 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGT 2839217 Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACA-GTTGCGTTAG 110497 || ||||| | || ||| ||||| | ||| | || | ||| | | || | | Sbjct 2839218 CTCGGTCTGAGCCTCGAGGATGGCATACCAAA-----GCTTCTGGGCCTTGATGGTCTTG 2839272 Query 110498 CGAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 ||| |||| |||| ||||||||| ||||||| |||| || |||| || || Sbjct 2839273 CGAC-CCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGCA 2839331 Query 110553 ATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAAC 110612 |||| || || || | ||| || | ||||| ||| | | || ||| || Sbjct 2839332 GTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGAC 2839391 Query 110613 CCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTC 110672 |||||||||||||| || || ||||| | || ||||||||||||| ||| |||| Sbjct 2839392 TCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTC 2839451 Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732 || | || ||||| ||| | |||| || || | || || | |||||| || || Sbjct 2839452 CTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTC 2839511 Query 110733 GAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGC 110786 || || | ||||| | || | |||| || |||||| || ||||| || Sbjct 2839512 AAGGTAAATAGCGAAAGCGCC---AGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGC 2839568 Query 110787 TGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCT 110846 ||| || ||||| | ||||| ||||| | || | || || || || || Sbjct 2839569 AGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGC 2839628 Query 110847 AATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906 ||| ||| | |||||||||| ||| | | |||||| ||||| ||| ||| Sbjct 2839629 AATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTT 2839688 Query 110907 ACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 || || || ||| |||| || | || ||||| ||||| || ||| |||| Sbjct 2839689 GGAGATCATGGCGCAGGTCT-TGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCA 2839747 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGAC-GAGGCGTTCCCGCATTGAAGAGTGTA 111024 || | | || ||||| ||||||| ||| | || |||| || || || ||||||||||| Sbjct 2839748 TGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTACCAGCGTTGAAGAGTGTG 2839806 Query 111025 GGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGG 111082 || | ||||| ||| ||| |||| |||||| |||||| || |||| || Sbjct 2839807 GGGGAGGCATGGGTGA--AGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCT 2839864 Query 111083 GTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGA 111142 || | | ||| || || | ||||| ||||||| ||| | || || | ||| Sbjct 2839865 CGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGG 2839924 Query 111143 TTAGCTTTCCATCAACACGCT---GAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGT 111199 | ||| ||||||| ||| | ||||| |||| |||||||||| || |||| Sbjct 2839925 CAATCTTGCCATCAA---GCTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGT 2839981 Query 111200 AT 111201 || Sbjct 2839982 AT 2839983 >seq8 Length=5005225 Score = 109 bits (120), Expect = 6e-19 Identities = 333/504 (66%), Gaps = 33/504 (7%) Strand=Plus/Minus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || || | || || | ||||| || ||| | | ||| || | || Sbjct 2270179 TCGAAACGGCCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 2270120 Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| |||| || | ||| | ||| |||||||||||| || || | | |||||| Sbjct 2270119 AGGACAACAA--CCTG-CTCCTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTC 2270063 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-------CACCTGCC--GAACGCTTC 11673 | || ||| ||||| |||||| ||| | | |||| | || || Sbjct 2270062 AGAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTCCTGTCTTGATCG---- 2270007 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||| | ||||| |||||||||||||| | ||| || || | ||| || | Sbjct 2270006 --ACCAATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTACGGGCATTC 2269949 Query 11734 TCGAAAAGTTCACGTACACGCTTC--GCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 | || || || || ||| ||| | || ||||| || |||||||| || || | | Sbjct 2269948 GCAAACAGGTCTCG--CACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGG 2269891 Query 11792 --CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | || || | ||||| |||||||||| |||||| || ||| |||| || || | Sbjct 2269890 AACCGCTGA-CGCTGAA-GAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAA 2269833 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--A 11907 |||||||| || || || | || || || | ||||||||| |||||||| || || | Sbjct 2269832 CGTCTTACCGGTTCCTGGAGGTCCGGCAAGGATGGCGCCACGAGGGATCTTTGCGCCTAA 2269773 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | || | ||||||| || ||||||||||| |||| |||| || ||| |||| Sbjct 2269772 CCTCTCGA--AGCGCTCGGGAGTCTTGAGGAAGCTGACAAACTCCATAATCTCCGTCTTG 2269715 Query 11968 GCGGAGTCGATACCCTCAACATCG 11991 || ||| ||||| |||| ||| Sbjct 2269714 GCCTCGTCCATACCGGCAACGTCG 2269691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975749685200