Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq6 149 7e-31
seq8 109 6e-19
>seq6
Length=6290098
Score = 149 bits (164), Expect = 7e-31
Identities = 335/498 (67%), Gaps = 14/498 (3%)
Strand=Plus/Plus
Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458
|||| || || || || ||||| ||||| ||||||||| |||||| || | |||
Sbjct 2838184 GCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGC 2838243
Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518
|| | || ||| | |||||| || ||| | ||| | ||||| |||||
Sbjct 2838244 ATACTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGG 2838303
Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCC 109575
|||||||| |||||| || || ||||| | | | | | | || || || |||
Sbjct 2838304 TCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCT---GGGAGATCTCC 2838360
Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635
|| || |||||||||| | ||||| ||| ||||||||| |||||| || |||||
Sbjct 2838361 CAAACGGTCTTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA- 2838419
Query 109636 CCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTG 109692
||| || | |||| | | |||||| | | ||||| || || | | |
Sbjct 2838420 --ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACG 2838477
Query 109693 AGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751
||||| | |||||| | |||||| || || || || ||||| || || |
Sbjct 2838478 AGATCCTTCAACAACCAGGG-GTTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTG 2838536
Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811
||||||||| | |||||||| ||||| ||||| |||||||| | ||| || | ||||||
Sbjct 2838537 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGA 2838596
Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871
|| || ||||||||||| | ||| | |||||| || | ||| | | ||| | | ||||
Sbjct 2838597 GGCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTC 2838656
Query 109872 ACGCATTGCGTCCCAATC 109889
|| || |||||||||
Sbjct 2838657 CTTCAGTGAGTCCCAATC 2838674
Score = 143 bits (158), Expect = 3e-29
Identities = 545/842 (65%), Gaps = 35/842 (4%)
Strand=Plus/Plus
Query 110379 GTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438
||||||||| || ||| |||| |||||||| || |||||| | ||| | |||||
Sbjct 2839158 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGT 2839217
Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACA-GTTGCGTTAG 110497
|| ||||| | || ||| ||||| | ||| | || | ||| | | || | |
Sbjct 2839218 CTCGGTCTGAGCCTCGAGGATGGCATACCAAA-----GCTTCTGGGCCTTGATGGTCTTG 2839272
Query 110498 CGAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552
||| |||| |||| ||||||||| ||||||| |||| || |||| || ||
Sbjct 2839273 CGAC-CCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGCA 2839331
Query 110553 ATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAAC 110612
|||| || || || | ||| || | ||||| ||| | | || ||| ||
Sbjct 2839332 GTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGAC 2839391
Query 110613 CCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTC 110672
|||||||||||||| || || ||||| | || ||||||||||||| ||| ||||
Sbjct 2839392 TCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTC 2839451
Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732
|| | || ||||| ||| | |||| || || | || || | |||||| || ||
Sbjct 2839452 CTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTC 2839511
Query 110733 GAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGC 110786
|| || | ||||| | || | |||| || |||||| || ||||| ||
Sbjct 2839512 AAGGTAAATAGCGAAAGCGCC---AGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGC 2839568
Query 110787 TGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCT 110846
||| || ||||| | ||||| ||||| | || | || || || || ||
Sbjct 2839569 AGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGC 2839628
Query 110847 AATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906
||| ||| | |||||||||| ||| | | |||||| ||||| ||| |||
Sbjct 2839629 AATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTT 2839688
Query 110907 ACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965
|| || || ||| |||| || | || ||||| ||||| || ||| ||||
Sbjct 2839689 GGAGATCATGGCGCAGGTCT-TGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCA 2839747
Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGAC-GAGGCGTTCCCGCATTGAAGAGTGTA 111024
|| | | || ||||| ||||||| ||| | || |||| || || || |||||||||||
Sbjct 2839748 TGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTACCAGCGTTGAAGAGTGTG 2839806
Query 111025 GGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGG 111082
|| | ||||| ||| ||| |||| |||||| |||||| || |||| ||
Sbjct 2839807 GGGGAGGCATGGGTGA--AGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCT 2839864
Query 111083 GTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGA 111142
|| | | ||| || || | ||||| ||||||| ||| | || || | |||
Sbjct 2839865 CGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGG 2839924
Query 111143 TTAGCTTTCCATCAACACGCT---GAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGT 111199
| ||| ||||||| ||| | ||||| |||| |||||||||| || ||||
Sbjct 2839925 CAATCTTGCCATCAA---GCTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGT 2839981
Query 111200 AT 111201
||
Sbjct 2839982 AT 2839983
>seq8
Length=5005225
Score = 109 bits (120), Expect = 6e-19
Identities = 333/504 (66%), Gaps = 33/504 (7%)
Strand=Plus/Minus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
|||||||| || || || | || || | ||||| || ||| | | ||| || | ||
Sbjct 2270179 TCGAAACGGCCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 2270120
Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
| ||| |||| || | ||| | ||| |||||||||||| || || | | ||||||
Sbjct 2270119 AGGACAACAA--CCTG-CTCCTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTC 2270063
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-------CACCTGCC--GAACGCTTC 11673
| || ||| ||||| |||||| ||| | | |||| | || ||
Sbjct 2270062 AGAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTCCTGTCTTGATCG---- 2270007
Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
||| | ||||| |||||||||||||| | ||| || || | ||| || |
Sbjct 2270006 --ACCAATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTACGGGCATTC 2269949
Query 11734 TCGAAAAGTTCACGTACACGCTTC--GCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791
| || || || || ||| ||| | || ||||| || |||||||| || || | |
Sbjct 2269948 GCAAACAGGTCTCG--CACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGG 2269891
Query 11792 --CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849
| || || | ||||| |||||||||| |||||| || ||| |||| || || |
Sbjct 2269890 AACCGCTGA-CGCTGAA-GAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAA 2269833
Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--A 11907
|||||||| || || || | || || || | ||||||||| |||||||| || || |
Sbjct 2269832 CGTCTTACCGGTTCCTGGAGGTCCGGCAAGGATGGCGCCACGAGGGATCTTTGCGCCTAA 2269773
Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967
| || | ||||||| || ||||||||||| |||| |||| || ||| ||||
Sbjct 2269772 CCTCTCGA--AGCGCTCGGGAGTCTTGAGGAAGCTGACAAACTCCATAATCTCCGTCTTG 2269715
Query 11968 GCGGAGTCGATACCCTCAACATCG 11991
|| ||| ||||| |||| |||
Sbjct 2269714 GCCTCGTCCATACCGGCAACGTCG 2269691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975749685200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |