Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq6 150 4e-31
seq10 140 7e-28
>seq6
Length=6290098
Score = 150 bits (166), Expect = 4e-31
Identities = 161/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
|| || || ||||| ||||| || ||||| |||||||| | |||| || | ||||| ||
Sbjct 607591 ACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAG-GTACGACCATCCTC 607533
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || |||||||| | || || ||||| ||||||||||| || || |||||
Sbjct 607532 AAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTG 607473
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || ||||||||| ||||||||||| ||| ||| || || || |||| ||||||
Sbjct 607472 GATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTT 607413
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | || || ||||| | |||||
Sbjct 607412 GCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || || || || || || || ||||||||| ||||| | ||||||||
Sbjct 607819 ACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCC 607760
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||||||||| || || ||||| || ||||| || || ||||| ||
Sbjct 607759 AGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 607700
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || ||||| ||||| || || ||||| | |||| |||||||
Sbjct 607699 ATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTT 607640
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || ||||| | |||||
Sbjct 607639 CCAGTCAGCGTCTTGACGAAGATCTGCAT 607611
Score = 84.2 bits (92), Expect = 5e-11
Identities = 190/283 (67%), Gaps = 2/283 (1%)
Strand=Plus/Minus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||| ||| |||||| ||||||| |||||||||||||| | | || | || |
Sbjct 2839432 TTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGACT 2839373
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| ||| | || |||||||| ||||| || | ||| ||||| |||||||
Sbjct 2839372 GGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTATGGCGAGGAGTTCG 2839313
Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAA 160765
|| | | || || | ||||| ||||| ||| | | ||| | | ||||||||
Sbjct 2839312 AGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTC-GCAAGACCATCAAGGCCCAG 2839254
Query 160766 GAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATAC 160825
| || ||| || |||||| | || || |||| || | ||||| || |||
Sbjct 2839253 AAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTTTAC 2839194
Query 160826 AAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868
|||||||| | |||||||| |||||||||||| | ||||
Sbjct 2839193 AAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAA 2839151
>seq10
Length=4416304
Score = 140 bits (154), Expect = 7e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| |||| || || | || || |||
Sbjct 3556424 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 3556483
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 3556484 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 3556543
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || ||||| |||||||| | |||||
Sbjct 3556544 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 3556603
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153
|| |||| || || ||||| | ||||| || ||||||
Sbjct 3556604 CCCGTCAGGGTCTTGACGAAGATCTGCATGATTGCCTACTTG 3556645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481116682078
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |