Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq15 122 7e-23
>seq15
Length=3115873
Score = 122 bits (134), Expect = 7e-23
Identities = 444/695 (64%), Gaps = 65/695 (9%)
Strand=Plus/Plus
Query 29744 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 29803
|||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| |
Sbjct 414030 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 414089
Query 29804 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCC 29862
||| |||||||| ||| ||||||||| ||||| |||| | ||| | | || ||||
Sbjct 414090 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 414148
Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922
||| | | || | | || ||||||| ||||||||| | ||||||||| |||||
Sbjct 414149 GGTACCAAATCGCACGCCCGCGCAATCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTG 414208
Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 29977
||||| |||||||| |||||||| | |||| |||||| | ||| || ||| |
Sbjct 414209 AAGGGCACCCCGAGTCCCATGTCGCAAGACCGCTGGTACAACTGGCAGTGGAGGTGGCCC 414268
Query 29978 -----------CTC---------CGTCGCTC--------------------ACGTAAAAC 29997
||| ||| || | || ||||||
Sbjct 414269 TTTGGCTTCTCCTCGTTTGCGGGCGTGGCACCGCGGGCTCGCGGGTACGAGACATAAAAC 414328
Query 29998 TG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30054
|| | ||||| |||||||| || || ||||| || || ||||||||
Sbjct 414329 TGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGATCCGCTGGGTTCCAT 414385
Query 30055 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30114
|||| | || |||||| | ||| | ||||| || ||| || | | | | |
Sbjct 414386 GCGCTGAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCC 414445
Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174
|| || || || ||| |||| ||| || | | | ||| |||||| || || ||
Sbjct 414446 AGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAAG 414505
Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234
|| | ||| ||||| |||||||| || || ||||| || |||| | ||| || |||
Sbjct 414506 TGGCGCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGACTTCGCGGTGGGAGAGGCCG 414565
Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTC-- 30290
|||| | || || | || |||||| ||||||||||||| || || |||| |
Sbjct 414566 ACGCTGTCGAGGAACTCGCGCGATCCGTTGCCGTCCCAGATCTTGACGCCGGCTTCGCTC 414625
Query 30291 --GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACG 30348
|| |||| | || | ||| | ||||| |||||||||||| || || | | |||
Sbjct 414626 AGGGCGAGCGAT---GA-TGTGTTG-CCCTC-GACGAACCACAGGAGTTCGGCAATGACT 414679
Query 30349 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
|| ||||| | |||||| |||||||||||
Sbjct 414680 GCGCGGAGGAAGACACGCTTGGTTGTGAGGAGGGG 414714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617430679082
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |