Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq15 122 7e-23 >seq15 Length=3115873 Score = 122 bits (134), Expect = 7e-23 Identities = 444/695 (64%), Gaps = 65/695 (9%) Strand=Plus/Plus Query 29744 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 29803 |||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| | Sbjct 414030 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 414089 Query 29804 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCC 29862 ||| |||||||| ||| ||||||||| ||||| |||| | ||| | | || |||| Sbjct 414090 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 414148 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 ||| | | || | | || ||||||| ||||||||| | ||||||||| ||||| Sbjct 414149 GGTACCAAATCGCACGCCCGCGCAATCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTG 414208 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 29977 ||||| |||||||| |||||||| | |||| |||||| | ||| || ||| | Sbjct 414209 AAGGGCACCCCGAGTCCCATGTCGCAAGACCGCTGGTACAACTGGCAGTGGAGGTGGCCC 414268 Query 29978 -----------CTC---------CGTCGCTC--------------------ACGTAAAAC 29997 ||| ||| || | || |||||| Sbjct 414269 TTTGGCTTCTCCTCGTTTGCGGGCGTGGCACCGCGGGCTCGCGGGTACGAGACATAAAAC 414328 Query 29998 TG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30054 || | ||||| |||||||| || || ||||| || || |||||||| Sbjct 414329 TGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGATCCGCTGGGTTCCAT 414385 Query 30055 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30114 |||| | || |||||| | ||| | ||||| || ||| || | | | | | Sbjct 414386 GCGCTGAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCC 414445 Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 || || || || ||| |||| ||| || | | | ||| |||||| || || || Sbjct 414446 AGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAAG 414505 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 || | ||| ||||| |||||||| || || ||||| || |||| | ||| || ||| Sbjct 414506 TGGCGCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGACTTCGCGGTGGGAGAGGCCG 414565 Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTC-- 30290 |||| | || || | || |||||| ||||||||||||| || || |||| | Sbjct 414566 ACGCTGTCGAGGAACTCGCGCGATCCGTTGCCGTCCCAGATCTTGACGCCGGCTTCGCTC 414625 Query 30291 --GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACG 30348 || |||| | || | ||| | ||||| |||||||||||| || || | | ||| Sbjct 414626 AGGGCGAGCGAT---GA-TGTGTTG-CCCTC-GACGAACCACAGGAGTTCGGCAATGACT 414679 Query 30349 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 || ||||| | |||||| ||||||||||| Sbjct 414680 GCGCGGAGGAAGACACGCTTGGTTGTGAGGAGGGG 414714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617430679082