Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq6 361 1e-94
seq9 183 6e-41
>seq6
Length=6290098
Score = 361 bits (400), Expect = 1e-94
Identities = 1145/1754 (65%), Gaps = 78/1754 (4%)
Strand=Plus/Plus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| || ||||| | || ||| ||| |||| || || || ||||||||||| |||||
Sbjct 2838157 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 2838216
Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669
|| || ||| ||||||| | |||||| |||| |||| | || ||
Sbjct 2838217 AGACCAAGCTT---CCAGCCGGCGAAGTGCATACTGGTGA---TCTTGCCC---ATTGTC 2838267
Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729
|||| | | |||| | ||| |||||||| |||||| ||||| | |
Sbjct 2838268 GGGTCCTTCATGTGG---------ATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCA 2838318
Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789
| ||| || ||||| | | | | |||||||| |||||| ||||||||| | |
Sbjct 2838319 CGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATCTCCCAAACGGTCTTGTACAGA 2838378
Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTC 212846
| |||| || | || | | |||||||||||| | ||| || | | ||| |
Sbjct 2838379 GCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATA 2838438
Query 212847 AGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGA 212906
| | | |||| | ||| ||| |||||| || | || ||| | ||
Sbjct 2838439 CGGTTCTT---CATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAG 2838495
Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966
|||||||| | |||||| || || | || || | | ||||| | ||| || ||||||
Sbjct 2838496 GGGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAG 2838555
Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026
||||||| || ||||||||| |||| ||||| | |||| ||| || |||||||||||
Sbjct 2838556 GGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCA 2838615
Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086
|| || | |||||| | ||| |||||||| ||| | | || || |||||
Sbjct 2838616 ACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG---TG---AGTCC 2838669
Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146
|| | ||||| |||| | ||| || ||||||||||| |||| | ||| || | |
Sbjct 2838670 CAA-TCCCAGA--GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGG 2838726
Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206
| ||| ||||| ||| | |||||||| ||| | |||||||||||||| |||
Sbjct 2838727 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGAC 2838786
Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266
|| ||||||| ||||||||| || || |||| | ||||||| | ||||||
Sbjct 2838787 ATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCTCA 2838846
Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATG 213326
|| ||| ||| ||||| | | |||| ||||||| || |||||||| || |
Sbjct 2838847 GGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGA 2838906
Query 213327 CCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCA 213385
|| ||||| | ||| | || ||| ||| |||| ||| | |||||| ||||
Sbjct 2838907 CCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCGGGAACGGGGTAGTGGTTGAC 2838965
Query 213386 GTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445
|| ||||||||||| | |||||| | || | || || | | || | || |
Sbjct 2838966 ATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGAAGCTTCTGG-- 2839023
Query 213446 ATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAG 213499
|| ||||| | || || | || || ||||| || | | ||||
Sbjct 2839024 ----AAGTCGTAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAAGGGAAGCCAA 2839079
Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559
|||||| || || ||||| | | | |||||| |||||||| ||||| ||||||
Sbjct 2839080 GTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCAAAGGTTGGA 2839139
Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619
|| ||||| || || ||||||| ||||| ||| |||||||| ||||||||| ||
Sbjct 2839140 GCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAG 2839199
Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTG 213677
|||| ||||| || ||||| ||| | | | || || ||| ||| || | | |
Sbjct 2839200 CATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGAT--GGCATACCAAAGCTTCTGG 2839257
Query 213678 GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTT 213736
||||||| | || | | | | | | || |||||||| ||||| | | |
Sbjct 2839258 GCCTTGATG----GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTC 2839313
Query 213737 GAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795
||| || | ||| || | | | |||| || || || ||| ||||||||| |||
Sbjct 2839314 GAACTCCTCGCCATAGCAGTCAG-CCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCC 2839372
Query 213796 AGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854
|||| ||| | |||| |||||||| ||||||||| || |||| ||| || ||| |||
Sbjct 2839373 AGTCGGCGTTCTTCTC-GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAA 2839431
Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914
||||| | || | ||| ||| ||| ||| ||||||| || | || || |||
Sbjct 2839432 AGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAG 2839491
Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCC 213971
| ||| |||||||||||||| | ||| || || || ||||| | || | ||||| |||
Sbjct 2839492 ACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCC 2839551
Query 213972 TGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027
||||| | | | || | || |||| |||| || || | ||| | | |||||
Sbjct 2839552 TGGTCGA----CGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTT 2839607
Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAG 214085
|| |||||||| || || ||||| ||||| | ||| | | | || | | |||
Sbjct 2839608 CGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAG 2839667
Query 214086 AGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATG 214145
| || |||||||| || ||||||||||||||||||| | | | || || |||
Sbjct 2839668 A--CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATA 2839725
Query 214146 CCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGAC 214205
|| | || ||| || | | || | | |||||| || |||||| | |
Sbjct 2839726 CCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGG 2839785
Query 214206 GAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTG 214265
| |||| |||||| || |||||| ||||||| | | |||||| | || | ||| ||
Sbjct 2839786 GTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTG 2839845
Query 214266 TAGGTCTCCAGGAC 214279
|||||||| | |||
Sbjct 2839846 TAGGTCTCGATGAC 2839859
>seq9
Length=4851470
Score = 183 bits (202), Expect = 6e-41
Identities = 349/508 (69%), Gaps = 17/508 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| | || | |||||||||||||| ||||| || | | |||||||||||
Sbjct 3450974 CTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 3450915
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957
||||||| ||||||||||| | || || ||| |||| ||| | |||| |
Sbjct 3450914 CATGAAGTCGAAGGGGTTGGAGGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAGGA 3450856
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
|| | || || ||| |||| ||||| | ||| | | || ||||||||| | || |
Sbjct 3450855 GGCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAG 3450796
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
||||| ||||| ||||| ||||||| ||| |||| ||||| || | | || |
Sbjct 3450795 CGCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGT 3450736
Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT-AGAGCAT-----GC 48131
|| || | || ||| |||||| | |||||||| | |||| | ||
Sbjct 3450735 CCTCAATG----AC-CTGC----TTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGGC 3450685
Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191
|||||||||| |||||| || ||||| ||| ||||||| ||||||||||| ||||
Sbjct 3450684 AGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGAC 3450625
Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251
| ||||||| || | || |||||||| || || | || |||| || ||||||||
Sbjct 3450624 CGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGA 3450565
Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311
| ||||| || || || || || || | || |||| || | ||||| || ||
Sbjct 3450564 TACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTGA 3450505
Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339
|||| || |||||||| ||||||||
Sbjct 3450504 TCCACTTCAGGGCCCAGTCAGCCTTCTT 3450477
Score = 91.5 bits (100), Expect = 3e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||||||||| | ||||| || ||||||||| ||||||||| | |||||| |
Sbjct 3450334 TCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGGA 3450275
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
|||| || || |||||| | ||| | ||| ||||||||||| || || || || || |
Sbjct 3450274 CCTGGACCTCGCCGGAGAAGCGCTCGACCAGGTTCTCATTGACGATACCGTCCGATGCGG 3450215
Query 48549 CAAAGAAGGCAAG 48561
| |||||||||||
Sbjct 3450214 CGAAGAAGGCAAG 3450202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931532404098560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |