Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 361 1e-94 seq9 183 6e-41 >seq6 Length=6290098 Score = 361 bits (400), Expect = 1e-94 Identities = 1145/1754 (65%), Gaps = 78/1754 (4%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || ||| ||| |||| || || || ||||||||||| ||||| Sbjct 2838157 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 2838216 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669 || || ||| ||||||| | |||||| |||| |||| | || || Sbjct 2838217 AGACCAAGCTT---CCAGCCGGCGAAGTGCATACTGGTGA---TCTTGCCC---ATTGTC 2838267 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 |||| | | |||| | ||| |||||||| |||||| ||||| | | Sbjct 2838268 GGGTCCTTCATGTGG---------ATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCA 2838318 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | ||| || ||||| | | | | |||||||| |||||| ||||||||| | | Sbjct 2838319 CGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATCTCCCAAACGGTCTTGTACAGA 2838378 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTC 212846 | |||| || | || | | |||||||||||| | ||| || | | ||| | Sbjct 2838379 GCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATA 2838438 Query 212847 AGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGA 212906 | | | |||| | ||| ||| |||||| || | || ||| | || Sbjct 2838439 CGGTTCTT---CATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAG 2838495 Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | || || | | ||||| | ||| || |||||| Sbjct 2838496 GGGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAG 2838555 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||||||| |||| ||||| | |||| ||| || ||||||||||| Sbjct 2838556 GGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCA 2838615 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 || || | |||||| | ||| |||||||| ||| | | || || ||||| Sbjct 2838616 ACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG---TG---AGTCC 2838669 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || | ||||| |||| | ||| || ||||||||||| |||| | ||| || | | Sbjct 2838670 CAA-TCCCAGA--GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGG 2838726 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 | ||| ||||| ||| | |||||||| ||| | |||||||||||||| ||| Sbjct 2838727 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGAC 2838786 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 || ||||||| ||||||||| || || |||| | ||||||| | |||||| Sbjct 2838787 ATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCTCA 2838846 Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATG 213326 || ||| ||| ||||| | | |||| ||||||| || |||||||| || | Sbjct 2838847 GGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGA 2838906 Query 213327 CCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCA 213385 || ||||| | ||| | || ||| ||| |||| ||| | |||||| |||| Sbjct 2838907 CCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCGGGAACGGGGTAGTGGTTGAC 2838965 Query 213386 GTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445 || ||||||||||| | |||||| | || | || || | | || | || | Sbjct 2838966 ATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGAAGCTTCTGG-- 2839023 Query 213446 ATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAG 213499 || ||||| | || || | || || ||||| || | | |||| Sbjct 2839024 ----AAGTCGTAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAAGGGAAGCCAA 2839079 Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 |||||| || || ||||| | | | |||||| |||||||| ||||| |||||| Sbjct 2839080 GTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCAAAGGTTGGA 2839139 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619 || ||||| || || ||||||| ||||| ||| |||||||| ||||||||| || Sbjct 2839140 GCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAG 2839199 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTG 213677 |||| ||||| || ||||| ||| | | | || || ||| ||| || | | | Sbjct 2839200 CATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGAT--GGCATACCAAAGCTTCTGG 2839257 Query 213678 GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTT 213736 ||||||| | || | | | | | | || |||||||| ||||| | | | Sbjct 2839258 GCCTTGATG----GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTC 2839313 Query 213737 GAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795 ||| || | ||| || | | | |||| || || || ||| ||||||||| ||| Sbjct 2839314 GAACTCCTCGCCATAGCAGTCAG-CCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCC 2839372 Query 213796 AGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 |||| ||| | |||| |||||||| ||||||||| || |||| ||| || ||| ||| Sbjct 2839373 AGTCGGCGTTCTTCTC-GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAA 2839431 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 ||||| | || | ||| ||| ||| ||| ||||||| || | || || ||| Sbjct 2839432 AGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAG 2839491 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCC 213971 | ||| |||||||||||||| | ||| || || || ||||| | || | ||||| ||| Sbjct 2839492 ACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCC 2839551 Query 213972 TGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 ||||| | | | || | || |||| |||| || || | ||| | | ||||| Sbjct 2839552 TGGTCGA----CGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTT 2839607 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAG 214085 || |||||||| || || ||||| ||||| | ||| | | | || | | ||| Sbjct 2839608 CGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAG 2839667 Query 214086 AGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATG 214145 | || |||||||| || ||||||||||||||||||| | | | || || ||| Sbjct 2839668 A--CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATA 2839725 Query 214146 CCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGAC 214205 || | || ||| || | | || | | |||||| || |||||| | | Sbjct 2839726 CCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGG 2839785 Query 214206 GAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTG 214265 | |||| |||||| || |||||| ||||||| | | |||||| | || | ||| || Sbjct 2839786 GTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTG 2839845 Query 214266 TAGGTCTCCAGGAC 214279 |||||||| | ||| Sbjct 2839846 TAGGTCTCGATGAC 2839859 >seq9 Length=4851470 Score = 183 bits (202), Expect = 6e-41 Identities = 349/508 (69%), Gaps = 17/508 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || | | ||||||||||| Sbjct 3450974 CTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 3450915 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||||||| ||||||||||| | || || ||| |||| ||| | |||| | Sbjct 3450914 CATGAAGTCGAAGGGGTTGGAGGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAGGA 3450856 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || ||| |||| ||||| | ||| | | || ||||||||| | || | Sbjct 3450855 GGCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAG 3450796 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| ||||| ||||| ||||||| ||| |||| ||||| || | | || | Sbjct 3450795 CGCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGT 3450736 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT-AGAGCAT-----GC 48131 || || | || ||| |||||| | |||||||| | |||| | || Sbjct 3450735 CCTCAATG----AC-CTGC----TTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGGC 3450685 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||||||||| |||||| || ||||| ||| ||||||| ||||||||||| |||| Sbjct 3450684 AGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGAC 3450625 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||||| || | || |||||||| || || | || |||| || |||||||| Sbjct 3450624 CGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGA 3450565 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || || || || || | || |||| || | ||||| || || Sbjct 3450564 TACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTGA 3450505 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 |||| || |||||||| |||||||| Sbjct 3450504 TCCACTTCAGGGCCCAGTCAGCCTTCTT 3450477 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||||||||| | ||||| || ||||||||| ||||||||| | |||||| | Sbjct 3450334 TCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGGA 3450275 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || |||||| | ||| | ||| ||||||||||| || || || || || | Sbjct 3450274 CCTGGACCTCGCCGGAGAAGCGCTCGACCAGGTTCTCATTGACGATACCGTCCGATGCGG 3450215 Query 48549 CAAAGAAGGCAAG 48561 | ||||||||||| Sbjct 3450214 CGAAGAAGGCAAG 3450202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532404098560