Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq6 264 2e-65
seq9 176 8e-39
>seq6
Length=6290098
Score = 264 bits (292), Expect = 2e-65
Identities = 838/1283 (65%), Gaps = 57/1283 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGG 221475
|| || |||||||||||||||||||| |||||| |||||||||| || | |||||| ||
Sbjct 2838790 GTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACG-GGCCTCAGG 2838848
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| ||| ||||| || || | || | || || || ||||| || || | |||
Sbjct 2838849 AGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACC 2838908
Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
||||| | ||| | | ||||| | ||| || || || ||||| || ||||||
Sbjct 2838909 AATGGGGCGGTGACGCATGTTGCTGTTGCGA--GCCTCGGGAACGGGGTAGTGGTTGACA 2838966
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
|| || | ||||| | ||| || | ||| | | |||||| |||||||||
Sbjct 2838967 TCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGAAGCTTCTGGAAG 2839026
Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713
| | | || || |||| | | || || || | | || |||| |
Sbjct 2839027 TCGTAGACA---------CCATCGTTGTAG---TCAACGAAGGTGGGCAGAGCAAGGGAA 2839074
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACAGAG 221772
|||| ||| || || || ||||| || || | | |||| |||||||| || || ||
Sbjct 2839075 GCCAAGTTGCAGACAGCGACCTCATCGG-GTGCGCAGTACTCAATGATCTCAGTGCAAAG 2839133
Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832
|||| || ||| || || |||| || || || |||||| |||||||| |||||
Sbjct 2839134 GTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTT 2839193
Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892
||| ||||| ||||| ||||||||| ||||||| | || || | ||| || |
Sbjct 2839194 GTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCT- 2839252
Query 221893 TCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945
||||| || | ||| | |||| | | | |||| ||| || ||| || |
Sbjct 2839253 TCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCT 2839312
Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005
|| ||| || || || || ||||||| || ||| ||| ||||
Sbjct 2839313 CGA---------ACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACA 2839363
Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065
| || |||||| ||| | | ||| |||| |||||| || || |||||||| || |
Sbjct 2839364 TGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAG 2839423
Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125
| | || || || | || || ||||||| ||| | ||| || | || |||| |
Sbjct 2839424 CGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGA 2839483
Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185
|||| || | ||| |||||||||||||| || || | || | |||||| || |||||||
Sbjct 2839484 ACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGT 2839543
Query 222186 TGCCACCCTGATCCACCATCCTCTCCAG-AGCGTTG---AAGATGCGAAGGGTCGGTACC 222241
|||||||||| || || | | || || |||| |||| ||||| | || |
Sbjct 2839544 TGCCACCCTGGTCGACG----TAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATG 2839599
Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301
| ||||| || ||||||||||| ||| || | || ||| | | ||| |
Sbjct 2839600 ACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAA---TACGG 2839656
Query 222302 GCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358
|| || || || ||||| || || ||||||||||||||| ||||||| |||
Sbjct 2839657 TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 2839716
Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418
|| ||| ||||| |||||||| ||||| | || | || || || || |||| |||
Sbjct 2839717 TCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGG 2839776
Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478
| | | || || ||||| || || ||||| ||| || || ||| | || |||
Sbjct 2839777 CACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGAC 2839836
Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537
|| || | ||| ||||| | ||| | ||| ||| || ||| || | | || ||
Sbjct 2839837 ATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACA 2839896
Query 222538 TCTCATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTAC 222595
| |||| ||||| |||||| ||||| || || | |||| |||||||||
Sbjct 2839897 -CGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCT--TGAGCAGGTAT 2839953
Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655
||| | ||||| |||||||| || ||||| | | || ||||| | | ||| || | |
Sbjct 2839954 GATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATG 2840013
Query 222656 GCGGCGTCCAGCTCCGACTTGTG 222678
|| | || ||||| ||||||
Sbjct 2840014 GCAGAATCGAGCTCTTCCTTGTG 2840036
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | ||||| | ||| || ||| | ||
Sbjct 2838498 GTTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGG 2838557
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || |||||||||||||| |||||| | ||| ||| || |||||||| || ||
Sbjct 2838558 CTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAAC 2838617
Query 221236 CAGCAGACTGTTGCGCA 221252
|||| |||||||||||
Sbjct 2838618 GAGCAAACTGTTGCGCA 2838634
>seq9
Length=4851470
Score = 176 bits (194), Expect = 8e-39
Identities = 330/490 (67%), Gaps = 7/490 (1%)
Strand=Plus/Plus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
|||||| |||||||||||| | ||| | | | || | | |||| ||||| ||||||
Sbjct 3450489 TGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTGCCTTT 3450548
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953
|| ||||| ||||| ||||| ||||||||| | ||||| ||||||| ||||||||| ||
Sbjct 3450549 GCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCAAGAAG 3450608
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
|| ||||||||| ||| ||| ||||||||||||||| | | |||||||||||
Sbjct 3450609 CGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTG 3450668
Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG-A 26072
|||| || ||||||||||| | ||| | || | || || || |||| |
Sbjct 3450669 CACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCACC----GCCCCAACAAGCA 3450724
Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132
| | | | |||||| || || || |||| ||| ||||||| |
Sbjct 3450725 GGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGC 3450784
Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192
| ||||||||| || | |||| || |||||||||| ||
Sbjct 3450785 TCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGT 3450844
Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTAACCCGT 26251
||||||| || ||| | || || || || ||||| ||| | || ||||| |
Sbjct 3450845 TGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCCTCC-AACCCCT 3450903
Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311
||||||| ||||| ||||| || | | || ||||||||||||||||| ||| | ||||
Sbjct 3450904 TCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCG 3450963
Query 26312 GCGACTATCA 26321
||||| ||
Sbjct 3450964 CTGACTACCA 3450973
Score = 86.0 bits (94), Expect = 1e-11
Identities = 175/258 (68%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| | || |||||||||||| |||||||||||
Sbjct 3450076 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 3450135
Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593
||||||| | ||| |||| || | ||| | | || ||| || | || ||
Sbjct 3450136 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 3450195
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || || || || ||||| || || ||||| ||| |||| |
Sbjct 3450196 CACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAATGAGAACCTGGTCGAGCGC 3450255
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
||| || | || || ||| | ||||| || |||||||| |||||||| ||
Sbjct 3450256 TTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 3450315
Query 25714 GAAAATGTGCACTCTGAG 25731
|| || | |||||||||
Sbjct 3450316 GAGAACATCCACTCTGAG 3450333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844405240960
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