Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 264 2e-65 seq9 176 8e-39 >seq6 Length=6290098 Score = 264 bits (292), Expect = 2e-65 Identities = 838/1283 (65%), Gaps = 57/1283 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGG 221475 || || |||||||||||||||||||| |||||| |||||||||| || | |||||| || Sbjct 2838790 GTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACG-GGCCTCAGG 2838848 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| ||||| || || | || | || || || ||||| || || | ||| Sbjct 2838849 AGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACC 2838908 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||| | ||| | | ||||| | ||| || || || ||||| || |||||| Sbjct 2838909 AATGGGGCGGTGACGCATGTTGCTGTTGCGA--GCCTCGGGAACGGGGTAGTGGTTGACA 2838966 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | ||||| | ||| || | ||| | | |||||| ||||||||| Sbjct 2838967 TCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGAAGCTTCTGGAAG 2839026 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | | | || || |||| | | || || || | | || |||| | Sbjct 2839027 TCGTAGACA---------CCATCGTTGTAG---TCAACGAAGGTGGGCAGAGCAAGGGAA 2839074 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACAGAG 221772 |||| ||| || || || ||||| || || | | |||| |||||||| || || || Sbjct 2839075 GCCAAGTTGCAGACAGCGACCTCATCGG-GTGCGCAGTACTCAATGATCTCAGTGCAAAG 2839133 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || ||| || || |||| || || || |||||| |||||||| ||||| Sbjct 2839134 GTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTT 2839193 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| ||||| ||||||||| ||||||| | || || | ||| || | Sbjct 2839194 GTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCT- 2839252 Query 221893 TCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945 ||||| || | ||| | |||| | | | |||| ||| || ||| || | Sbjct 2839253 TCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCT 2839312 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 || ||| || || || || ||||||| || ||| ||| |||| Sbjct 2839313 CGA---------ACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACA 2839363 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | || |||||| ||| | | ||| |||| |||||| || || |||||||| || | Sbjct 2839364 TGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAG 2839423 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || || || | || || ||||||| ||| | ||| || | || |||| | Sbjct 2839424 CGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGA 2839483 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| || | ||| |||||||||||||| || || | || | |||||| || ||||||| Sbjct 2839484 ACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGT 2839543 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAG-AGCGTTG---AAGATGCGAAGGGTCGGTACC 222241 |||||||||| || || | | || || |||| |||| ||||| | || | Sbjct 2839544 TGCCACCCTGGTCGACG----TAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATG 2839599 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 | ||||| || ||||||||||| ||| || | || ||| | | ||| | Sbjct 2839600 ACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAA---TACGG 2839656 Query 222302 GCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 || || || || ||||| || || ||||||||||||||| ||||||| ||| Sbjct 2839657 TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 2839716 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| ||||| |||||||| ||||| | || | || || || || |||| ||| Sbjct 2839717 TCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGG 2839776 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | || || ||||| || || ||||| ||| || || ||| | || ||| Sbjct 2839777 CACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGAC 2839836 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537 || || | ||| ||||| | ||| | ||| ||| || ||| || | | || || Sbjct 2839837 ATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACA 2839896 Query 222538 TCTCATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTAC 222595 | |||| ||||| |||||| ||||| || || | |||| ||||||||| Sbjct 2839897 -CGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCT--TGAGCAGGTAT 2839953 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655 ||| | ||||| |||||||| || ||||| | | || ||||| | | ||| || | | Sbjct 2839954 GATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATG 2840013 Query 222656 GCGGCGTCCAGCTCCGACTTGTG 222678 || | || ||||| |||||| Sbjct 2840014 GCAGAATCGAGCTCTTCCTTGTG 2840036 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | ||||| | ||| || ||| | || Sbjct 2838498 GTTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGG 2838557 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||||| |||||| | ||| ||| || |||||||| || || Sbjct 2838558 CTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAAC 2838617 Query 221236 CAGCAGACTGTTGCGCA 221252 |||| ||||||||||| Sbjct 2838618 GAGCAAACTGTTGCGCA 2838634 >seq9 Length=4851470 Score = 176 bits (194), Expect = 8e-39 Identities = 330/490 (67%), Gaps = 7/490 (1%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| |||||||||||| | ||| | | | || | | |||| ||||| |||||| Sbjct 3450489 TGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTGCCTTT 3450548 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || ||||| ||||| ||||| ||||||||| | ||||| ||||||| ||||||||| || Sbjct 3450549 GCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCAAGAAG 3450608 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||||||| ||| ||| ||||||||||||||| | | ||||||||||| Sbjct 3450609 CGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTG 3450668 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG-A 26072 |||| || ||||||||||| | ||| | || | || || || |||| | Sbjct 3450669 CACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCACC----GCCCCAACAAGCA 3450724 Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | | | | |||||| || || || |||| ||| ||||||| | Sbjct 3450725 GGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGC 3450784 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | ||||||||| || | |||| || |||||||||| || Sbjct 3450785 TCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGT 3450844 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTAACCCGT 26251 ||||||| || ||| | || || || || ||||| ||| | || ||||| | Sbjct 3450845 TGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCCTCC-AACCCCT 3450903 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 ||||||| ||||| ||||| || | | || ||||||||||||||||| ||| | |||| Sbjct 3450904 TCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCG 3450963 Query 26312 GCGACTATCA 26321 ||||| || Sbjct 3450964 CTGACTACCA 3450973 Score = 86.0 bits (94), Expect = 1e-11 Identities = 175/258 (68%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||||||||| ||||||||||| Sbjct 3450076 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 3450135 Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| | | || ||| || | || || Sbjct 3450136 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 3450195 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || || ||||| || || ||||| ||| |||| | Sbjct 3450196 CACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAATGAGAACCTGGTCGAGCGC 3450255 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| || | || || ||| | ||||| || |||||||| |||||||| || Sbjct 3450256 TTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 3450315 Query 25714 GAAAATGTGCACTCTGAG 25731 || || | ||||||||| Sbjct 3450316 GAGAACATCCACTCTGAG 3450333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844405240960