Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq6 105 4e-17
>seq6
Length=6290098
Score = 105 bits (116), Expect = 4e-17
Identities = 159/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
|||||||||||| || ||||| || || ||| || | || ||||| ||| ||||
Sbjct 607832 ACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATC-GCTCAGAG 607774
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | |||||| || ||||||||||| || |||||||| || || ||||| ||||| |
Sbjct 607773 TGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATAC 607714
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728
| |||||||| || ||||| || ||| ||||| || |||| || | | || ||
Sbjct 607713 CCTCCTTGTCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCA 607654
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || || || || || ||||| ||||| || ||
Sbjct 607653 A-TGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTG 607614
Score = 87.8 bits (96), Expect = 1e-11
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|||||||| || || | ||| ||||| || || || || || || | || ||
Sbjct 607375 CGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 607316
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | ||| ||||||||||| |||||||| || | ||| || || ||||| || || ||
Sbjct 607315 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCC 607256
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730
||||| || |||||||| |||||| || || ||||||| | | | |||||
Sbjct 607255 TCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGA-CCTCAAG 607197
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
||| || || || || ||||| ||||| ||||
Sbjct 607196 GGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 607165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268177741575032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |