Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 105 4e-17 >seq6 Length=6290098 Score = 105 bits (116), Expect = 4e-17 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 |||||||||||| || ||||| || || ||| || | || ||||| ||| |||| Sbjct 607832 ACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATC-GCTCAGAG 607774 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | |||||| || ||||||||||| || |||||||| || || ||||| ||||| | Sbjct 607773 TGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATAC 607714 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | |||||||| || ||||| || ||| ||||| || |||| || | | || || Sbjct 607713 CCTCCTTGTCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCA 607654 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || || ||||| ||||| || || Sbjct 607653 A-TGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTG 607614 Score = 87.8 bits (96), Expect = 1e-11 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || | ||| ||||| || || || || || || | || || Sbjct 607375 CGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 607316 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| ||||||||||| |||||||| || | ||| || || ||||| || || || Sbjct 607315 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCC 607256 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||| || |||||||| |||||| || || ||||||| | | | ||||| Sbjct 607255 TCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGA-CCTCAAG 607197 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 ||| || || || || ||||| ||||| |||| Sbjct 607196 GGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 607165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177741575032