Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 140 4e-28 seq9 105 8e-18 >seq6 Length=6290098 Score = 140 bits (154), Expect = 4e-28 Identities = 603/931 (65%), Gaps = 43/931 (5%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT--TCAACGGCTCGATGGCATCCTC 75202 ||||| || |||| ||||| |||| || | || || |||| ||| ||||||| | Sbjct 2839982 TACTTCGGCTTCAAGACCCTGGAGA-GATCATACCTGCTCAA--GCTTGATGGCAAGATT 2839926 Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262 || | || ||| ||||| ||||||| || ||| |||||||| || || || | Sbjct 2839925 GCCGAGAGACCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTC 2839866 Query 75263 GATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACAC 75320 || ||| | ||||| ||| || |||||| |||| | | ||| || || | | Sbjct 2839865 GAGCGCGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCATGCCTCCC 2839808 Query 75321 CAACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCC 75379 | || |||||||| |||||||| || || | ||| |||| |||||||| ||| | Sbjct 2839807 CCACACTCTTCAACGCTGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGAC 2839749 Query 75380 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 75439 | ||||| ||||| || | |||||||| | || || | | || || ||||| Sbjct 2839748 ATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCC 2839689 Query 75440 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 75499 ||| |||||| || ||||| | || || | | | |||| | || |||| Sbjct 2839688 AAGATGGCTGGTGGCATTGGTCTCAACGCTCACCGTATTCGTGCCACTGGCTCCTATATT 2839629 Query 75500 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559 || || || || || | ||| | ||||| |||||||| || |||||| ||| Sbjct 2839628 GCCGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACT 2839569 Query 75560 GCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTG 75613 || ||||| || | || | || ||||| || | |||| | ||| | Sbjct 2839568 GCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATTTACCTT 2839512 Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAA 75673 || || ||||| ||||| || | |||||| | || || || ||||| || | || Sbjct 2839511 GAGCCGTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAG 2839452 Query 75674 GAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGT--GGATTCCAGACCTTTTCATGAAG 75730 |||| || ||| | || || |||| || || | |||| || || || ||||||||| Sbjct 2839451 GAGG-TCCGTGCCCGTGACCT--TTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAG 2839395 Query 75731 CGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCC 75790 | || ||| || | | ||| | || | || || | || || || || | Sbjct 2839394 AGAGTCGAGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCT 2839335 Query 75791 GAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA---GAGG---AGGG 75843 ||| || ||| |||||||| || ||| | ||| ||||| || |||| |||| Sbjct 2839334 GACTGCTATGGC-GAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGG 2839276 Query 75844 TAGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGA 75902 | | ||| ||| | | || | | || | ||||| | || || ||| | | |||| Sbjct 2839275 TCG---CAA---GACCAT-CAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGA 2839223 Query 75903 CGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAA 75962 | |||||||| | || | |||||||||||||||||| ||| ||||| ||||| | Sbjct 2839222 CCGAGACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGA 2839163 Query 75963 AGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATA 76022 |||| | ||||| ||| ||||| || |||||||| || || | |||||| | Sbjct 2839162 AGAACCTCGGAACTATCCGCAGCTCCAACCTTTGCACTGAGATCATTGAGTACTGCGCAC 2839103 Query 76023 AGGATGAGACGGCTGTTTGCAATTTGGCATC 76053 |||||| ||||| ||||| ||||| || Sbjct 2839102 CCGATGAGGTCGCTGTCTGCAACTTGGCTTC 2839072 >seq9 Length=4851470 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 |||||||||| |||| || |||| ||||| ||| ||||||||||||||| ||| | Sbjct 3450521 CTCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGC 3450580 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || | | || | |||| | |||||||| || |||||||| || || |||||| || Sbjct 3450581 TTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAA 3450640 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || ||||| || |||||||| ||| || |||||| Sbjct 3450641 CGAGCTCATCTCCCGTGACGAGGGTCTGCACACCGACTTTGCC 3450683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569346457920