Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq6 354 1e-92 seq10 178 2e-39 seq8 93.3 6e-14 >seq6 Length=6290098 Score = 354 bits (392), Expect = 1e-92 Identities = 790/1176 (67%), Gaps = 15/1176 (1%) Strand=Plus/Minus Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 |||| || ||||| ||||| ||||||| || || || || ||||| || |||||||| | Sbjct 3565539 CAGTCGTCACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGACGCCG 3565480 Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830 | ||||| || || ||| ||| | || ||||| || || || || || || |||| Sbjct 3565479 GTCTCATTGCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCTGCCGCCATTG 3565420 Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | || ||||| |||||||| || | || || || | ||||| || || |||| Sbjct 3565419 CCTACGGTCTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGACCTTGGTG 3565360 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 ||||||| || ||||| || ||| | | ||||| | || || ||||| || ||| | | Sbjct 3565359 GTGGTACTTTCGATGTGTCTCTTTTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCA 3565300 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTG 196009 | |||||||| ||||| | |||||||| || ||||| ||||| || || || | Sbjct 3565299 CCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCG 3565240 Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 || | |||||| || ||| | ||||| || | || || | | || || || Sbjct 3565239 TC-AACGAGTTCAAGCGCAAGCACAAGAAGGACCTGTCCTCCAACGCCCGCGCCCTGCGC 3565181 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129 || || | || || || || |||||||| || || || || || | || || || Sbjct 3565180 CGTCTCCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCC 3565121 Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189 | ||||| || || |||| || || || |||||||| || | || |||||||| || Sbjct 3565120 ATCGAGATCGACTCCCTGTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGC 3565061 Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 || || ||| | | || |||| | || | || || || | || || Sbjct 3565060 TTCGAGGAGCTCTGCCAGGACCTGTTCCGCTCTACCATCCAGCCCGTCGACCGTGTCCTC 3565001 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 ||||| ||| | || ||||| |||| | || || ||||| || ||||| || ||| Sbjct 3565000 ACCGACGCCAAGGTCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCACC 3564941 Query 196310 CGTATTCCGAAGATTCAACAGATGCT-TTCT-AGCTT-CTTCAATAATAAAGATTTAAAC 196366 |||| ||| | || |||| ||| ||| | || |||||| || || ||| Sbjct 3564940 CGTA-TCCCCCGTGTC--CAGAAGCTCATCTCCGATTACTTCAACGGCAAGGAGCCCAAC 3564884 Query 196367 AAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTC 196426 || | |||||||| ||||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 3564883 AAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCCGCCATTCTG 3564824 Query 196427 TCAGGTG-----TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCG 196481 || |||| | | | | || | ||||| || || || |||||||| || Sbjct 3564823 TCCGGTGACACCTCCTCCAAGAGCACCAACGAGATC--CTTCTTCTCGATGTTGCCCCTC 3564766 Query 196482 TATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAA 196541 | ||||| ||| | || || || ||||| | ||||| || | ||| | ||||| | Sbjct 3564765 TGTCCCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATTCCCCGCAACACCA 3564706 Query 196542 CTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTC 196601 | || || || |||||| | ||||| || || | ||||| || || || ||||| | Sbjct 3564705 CCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCCGGTGTCC 3564646 Query 196602 ATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTT 196661 || || || || || || || ||| || | ||||| ||| | || || || | | Sbjct 3564645 TCATCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTCGGCAAGT 3564586 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721 |||| | || || ||||| | || ||| | |||||||| |||||| | || ||||| Sbjct 3564585 TCGAGCTTACCGGTATTCCCCCCGCTCCCCGCGGTGTTCCCCAGATTGAGGTCACCTTCG 3564526 Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG 196781 | | ||||| || ||||| | |||||| | || | || |||| | | ||||| || Sbjct 3564525 ACCTTGACGCCAACGGAATCATGAACGTCTCCGCCGTCGAGAAGGGTACCGGCAAGTCCA 3564466 Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841 | |||||||| || ||||| |||||||| || ||||| |||||||| || || || ||| Sbjct 3564465 ACAAGATTGTCATCACCAACGACAAGGGCCGCCTTTCCAAGGAGGACATCGAGCGCATGC 3564406 Query 196842 TTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || || || || |||| || ||| || || |||| Sbjct 3564405 TTGCTGAGGCCGAGAAGTTCAAGGATGAGGATGAGG 3564370 Score = 187 bits (206), Expect = 3e-42 Identities = 181/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || || || || |||||||| || || || || || ||||||||||| | Sbjct 607378 GTGGTATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAAT 607437 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | |||||||| || || ||| |||| | ||||| ||||||||||| |||||||| |||| Sbjct 607438 CTTCAGACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCG 607497 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | || || || || || |||||||| ||||| |||||| | | |||| Sbjct 607498 ACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCGGATT 607557 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| |||| |||||||| ||||| || || || || | || || |||||| Sbjct 607558 ACAACATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGTCTGCGTGGTGGT 607610 Score = 174 bits (192), Expect = 2e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || ||||| |||||||| ||||| || || || || |||||| | || || Sbjct 606893 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGATAACGTGAAGTCC 606952 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| |||||||| ||||||||||| || || ||||| ||||| || Sbjct 606953 AAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 607012 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 |||||||| || || || |||||| | || |||||| | || |||||||||||||| ||| Sbjct 607013 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 607072 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 | ||||| | ||||| |||||| Sbjct 607073 TTGGTTCTCCGCCTTCGTGGTGGT 607096 Score = 104 bits (114), Expect = 3e-17 Identities = 239/356 (67%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || |||| | ||| | ||| |||||||||||| || || | | | | Sbjct 1105692 CCCGAGGAGGTTTCCGCCATGATCTTGGGCAAGATGAAGGAGGTCGCCGAGGCCTACCTT 1105751 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || | || | | || || || || || || || ||||||| || || || Sbjct 1105752 GGCAAGAAGGTTACCCACGCCGTCGTTACCGTCCCCGCCTACTTCAACGACAACCAGCGC 1105811 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 ||||| || ||||| || | || ||||| || || ||| ||| | ||| |||| || Sbjct 1105812 CAGGCCACCAAGGATGCCGGTGTCATTGCCGGACTTAACGTTCTCCGCATTGTCAACGAG 1105871 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || || ||||| ||||||| | ||| || | | || | Sbjct 1105872 CCCACCGCCGCCGCTATCGCCTACGGTCTTGACAAGACCGAGGGTGA-GCGCCAGATC-A 1105929 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 ||| | | || || ||||||||||| || ||||| || ||||| || || ||| Sbjct 1105930 TTGTT-TACGACCTTGGTGGTGGTACTTTCGATGTTTCCCTTCTGTCCATCGACCAGGGT 1105988 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || |||||| || ||||| || || | |||||||| |||||||| Sbjct 1105989 GTCTTCGAGGTTCTGGCTACCGCCGGTGACACCCACTTGGGTGGTGAGGATTTCGA 1106044 Score = 100 bits (110), Expect = 4e-16 Identities = 447/693 (65%), Gaps = 29/693 (4%) Strand=Plus/Minus Query 78068 TTTAATGCAGGTACTCCCC-GTCCACAGATGTCATCTTGTTTCCTACTTGCAAATAAGGA 78126 || || || ||||| || | || | ||| |||| || || ||||| | | | ||||| Sbjct 2839799 TTCAACGCTGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGA 2839741 Query 78127 GGACTCTATTAATGGTATATACGGGACTCTCACAGAG-TGTGCTCAGATTTCTAAGTGGG 78185 ||||||||| | ||||| |||| || |||| ||| || || ||| || ||| || Sbjct 2839740 AGACTCTATTGAGGGTATCTACGACACCCTCA-AGACCTGCGCCATGATCTCCAAGATGG 2839682 Query 78186 CTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACAAGTCCAGGATTAGAGGAA 78245 ||||||| || ||||| | |||| | ||||||| | ||| ||| || | Sbjct 2839681 CTGGTGGCATTGGTCTCAACGCTCACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCA 2839622 Query 78246 CTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCACGCT 78305 | || || || | || | ||||| |||||| | || || || || || |||| Sbjct 2839621 CCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCT 2839562 Query 78306 ATGTCAACCAAGCGGGTCGTAGGAAG------GGGTCATTCGCTATGTACCTTGAACCTT 78359 | ||| |||| |||| | | ||| || | |||||||| |||||||| || | Sbjct 2839561 ACGTCGACCA---GGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATTTACCTTGAGCCGT 2839505 Query 78360 GGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGTGACGAGGAAGCTC 78419 |||||||||| || | || || |||| | || ||||| || | ||||| | | Sbjct 2839504 GGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCC 2839445 Query 78420 GATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAGG 78479 | | | || | ||| ||| | ||||| || ||||| || ||||||||||| || | Sbjct 2839444 GTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGA-G 2839386 Query 78480 AAGGA-GGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAGATGTATAC 78538 ||| | | | ||| | || | || || || || || || | || || Sbjct 2839385 AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTAT 2839326 Query 78539 GGGGAAGAATTCGAAAAATTGTACACTAAATACGA-----AGAGGAAGGTCTCGCTATTA 78593 || || || ||||| |||||| || ||||| || | |||| |||| | Sbjct 2839325 GGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGG-GTCGC----A 2839271 Query 78594 AGACAATTGATGCATCTGAA-CTATGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGC 78652 |||| || | || | ||| || ||| | || || || | ||| || ||||| ||| Sbjct 2839270 AGACCATCAAGGC-CCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGC 2839212 Query 78653 ACCCCGTATATGCTATACAAAGACAGCTG-TAACAGAAAGTCTAACCAAAAGAACCTAGG 78711 | ||| | ||||| ||||| || |||| ||| | ||| ||||| |||||||| || Sbjct 2839211 AACCCCTTCATGCTTTACAAGGA-TGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 2839153 Query 78712 TGTCATCAAAAGCTCTAACCTTTGCACAGAAAT 78744 ||| ||||| ||||||||||| || || Sbjct 2839152 AACTATCCGCAGCTCCAACCTTTGCACTGAGAT 2839120 >seq10 Length=4416304 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||| ||||| |||||||| Sbjct 3556632 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 3556573 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| |||||||| ||||| ||| Sbjct 3556572 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 3556513 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || |||||| | || |||||| Sbjct 3556512 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3556453 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | || || |||||| Sbjct 3556452 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 3556405 >seq8 Length=5005225 Score = 93.3 bits (102), Expect = 6e-14 Identities = 271/404 (67%), Gaps = 19/404 (5%) Strand=Plus/Plus Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608 ||||| ||||| || | || ||||| | || || || ||||| || | || || Sbjct 2269785 ATCCCTCGTGGCGCCATCCTTGCCGGACCTCCAGGAACCGGTAAGACGTTGCTTGCCAAG 2269844 Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATC 198665 || | ||| || || || |||| ||||| |||||| | || |||| ||||||| || Sbjct 2269845 GCCACCGCCGGCGAGTCTGGTGTTCCCTT-CTTCAGCG-TCAGCGGTTCCGAGTTTG-TC 2269901 Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725 |||||||| || ||||| ||| || | || || || || |||| | | || ||| | Sbjct 2269902 GAGATGTTTGTCGGTGTCGGTCCTTCAAGAGTGCGAGACCTGTTTGCGAATGCCCGTAAG 2269961 Query 198726 AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGT--AAGAAGCGTGGTG 198783 | | || || ||||||||||| |||||||| ||||| ||||| | ||| || | Sbjct 2269962 AGTGCCCCCTGCATCATCTTCATCGATGAGATCGACGCCATTGGTCGATCAAGACAGGAG 2270021 Query 198784 G--AACTACTACACCTGGTAATGATGAGCGTG-AGCAGACGATTAACCAGCTTCTCACTG 198840 | ||| | ||| || || ||||| | |||| || | |||||| | | || | Sbjct 2270022 GGTAAC-CGAATGGGTGGCAACGACGAGCGCGAAGCA-ACTCTGAACCAGATCTTGACCG 2270079 Query 198841 AGATGGATGGTTTTGACA---ATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAGGA 198897 ||||||| ||||| ||| | ||| | || | || || | |||| || || || Sbjct 2270080 AGATGGACGGTTTCAACACCCAGGAG-CAGG--TTGTTGTCCTCGCTGGCACCAACAGAG 2270136 Query 198898 TTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGAC 198941 || ||||| || | || ||| | |||||||| || |||||| Sbjct 2270137 CCGACATCCTTGACAAGGCGCTGATGCGTCCCGGCCGTTTCGAC 2270180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862120408480