Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq6 354 1e-92
seq10 178 2e-39
seq8 93.3 6e-14
>seq6
Length=6290098
Score = 354 bits (392), Expect = 1e-92
Identities = 790/1176 (67%), Gaps = 15/1176 (1%)
Strand=Plus/Minus
Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770
|||| || ||||| ||||| ||||||| || || || || ||||| || |||||||| |
Sbjct 3565539 CAGTCGTCACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGACGCCG 3565480
Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830
| ||||| || || ||| ||| | || ||||| || || || || || || ||||
Sbjct 3565479 GTCTCATTGCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCTGCCGCCATTG 3565420
Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890
| || ||||| |||||||| || | || || || | ||||| || || ||||
Sbjct 3565419 CCTACGGTCTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGACCTTGGTG 3565360
Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950
||||||| || ||||| || ||| | | ||||| | || || ||||| || ||| | |
Sbjct 3565359 GTGGTACTTTCGATGTGTCTCTTTTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCA 3565300
Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTG 196009
| |||||||| ||||| | |||||||| || ||||| ||||| || || || |
Sbjct 3565299 CCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCG 3565240
Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069
|| | |||||| || ||| | ||||| || | || || | | || || ||
Sbjct 3565239 TC-AACGAGTTCAAGCGCAAGCACAAGAAGGACCTGTCCTCCAACGCCCGCGCCCTGCGC 3565181
Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129
|| || | || || || || |||||||| || || || || || | || || ||
Sbjct 3565180 CGTCTCCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCC 3565121
Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189
| ||||| || || |||| || || || |||||||| || | || |||||||| ||
Sbjct 3565120 ATCGAGATCGACTCCCTGTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGC 3565061
Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249
|| || ||| | | || |||| | || | || || || | || ||
Sbjct 3565060 TTCGAGGAGCTCTGCCAGGACCTGTTCCGCTCTACCATCCAGCCCGTCGACCGTGTCCTC 3565001
Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309
||||| ||| | || ||||| |||| | || || ||||| || ||||| || |||
Sbjct 3565000 ACCGACGCCAAGGTCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCACC 3564941
Query 196310 CGTATTCCGAAGATTCAACAGATGCT-TTCT-AGCTT-CTTCAATAATAAAGATTTAAAC 196366
|||| ||| | || |||| ||| ||| | || |||||| || || |||
Sbjct 3564940 CGTA-TCCCCCGTGTC--CAGAAGCTCATCTCCGATTACTTCAACGGCAAGGAGCCCAAC 3564884
Query 196367 AAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTC 196426
|| | |||||||| ||||| || ||||| || ||||| ||||| ||||| || |||||
Sbjct 3564883 AAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCCGCCATTCTG 3564824
Query 196427 TCAGGTG-----TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCG 196481
|| |||| | | | | || | ||||| || || || |||||||| ||
Sbjct 3564823 TCCGGTGACACCTCCTCCAAGAGCACCAACGAGATC--CTTCTTCTCGATGTTGCCCCTC 3564766
Query 196482 TATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAA 196541
| ||||| ||| | || || || ||||| | ||||| || | ||| | ||||| |
Sbjct 3564765 TGTCCCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATTCCCCGCAACACCA 3564706
Query 196542 CTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTC 196601
| || || || |||||| | ||||| || || | ||||| || || || ||||| |
Sbjct 3564705 CCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCCGGTGTCC 3564646
Query 196602 ATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTT 196661
|| || || || || || || ||| || | ||||| ||| | || || || | |
Sbjct 3564645 TCATCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTCGGCAAGT 3564586
Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721
|||| | || || ||||| | || ||| | |||||||| |||||| | || |||||
Sbjct 3564585 TCGAGCTTACCGGTATTCCCCCCGCTCCCCGCGGTGTTCCCCAGATTGAGGTCACCTTCG 3564526
Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG 196781
| | ||||| || ||||| | |||||| | || | || |||| | | ||||| ||
Sbjct 3564525 ACCTTGACGCCAACGGAATCATGAACGTCTCCGCCGTCGAGAAGGGTACCGGCAAGTCCA 3564466
Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841
| |||||||| || ||||| |||||||| || ||||| |||||||| || || || |||
Sbjct 3564465 ACAAGATTGTCATCACCAACGACAAGGGCCGCCTTTCCAAGGAGGACATCGAGCGCATGC 3564406
Query 196842 TTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877
|| || || || |||| || ||| || || ||||
Sbjct 3564405 TTGCTGAGGCCGAGAAGTTCAAGGATGAGGATGAGG 3564370
Score = 187 bits (206), Expect = 3e-42
Identities = 181/233 (78%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| || || || || |||||||| || || || || || ||||||||||| |
Sbjct 607378 GTGGTATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAAT 607437
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| |||||||| || || ||| |||| | ||||| ||||||||||| |||||||| ||||
Sbjct 607438 CTTCAGACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCG 607497
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| || | || || || || || |||||||| ||||| |||||| | | ||||
Sbjct 607498 ACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCGGATT 607557
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| |||| |||||||| ||||| || || || || | || || ||||||
Sbjct 607558 ACAACATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGTCTGCGTGGTGGT 607610
Score = 174 bits (192), Expect = 2e-38
Identities = 161/204 (79%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945
|| || || || ||||| |||||||| ||||| || || || || |||||| | || ||
Sbjct 606893 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGATAACGTGAAGTCC 606952
Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005
||||| || || ||||| |||||||| ||||||||||| || || ||||| ||||| ||
Sbjct 606953 AAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 607012
Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065
|||||||| || || || |||||| | || |||||| | || |||||||||||||| |||
Sbjct 607013 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 607072
Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089
| ||||| | ||||| ||||||
Sbjct 607073 TTGGTTCTCCGCCTTCGTGGTGGT 607096
Score = 104 bits (114), Expect = 3e-17
Identities = 239/356 (67%), Gaps = 3/356 (1%)
Strand=Plus/Plus
Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691
||||| || |||| | ||| | ||| |||||||||||| || || | | | |
Sbjct 1105692 CCCGAGGAGGTTTCCGCCATGATCTTGGGCAAGATGAAGGAGGTCGCCGAGGCCTACCTT 1105751
Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751
|| || | || | | || || || || || || || ||||||| || || ||
Sbjct 1105752 GGCAAGAAGGTTACCCACGCCGTCGTTACCGTCCCCGCCTACTTCAACGACAACCAGCGC 1105811
Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811
||||| || ||||| || | || ||||| || || ||| ||| | ||| |||| ||
Sbjct 1105812 CAGGCCACCAAGGATGCCGGTGTCATTGCCGGACTTAACGTTCTCCGCATTGTCAACGAG 1105871
Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871
|| || || || || || || || ||||| ||||||| | ||| || | | || |
Sbjct 1105872 CCCACCGCCGCCGCTATCGCCTACGGTCTTGACAAGACCGAGGGTGA-GCGCCAGATC-A 1105929
Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931
||| | | || || ||||||||||| || ||||| || ||||| || || |||
Sbjct 1105930 TTGTT-TACGACCTTGGTGGTGGTACTTTCGATGTTTCCCTTCTGTCCATCGACCAGGGT 1105988
Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
| ||||| || |||||| || ||||| || || | |||||||| ||||||||
Sbjct 1105989 GTCTTCGAGGTTCTGGCTACCGCCGGTGACACCCACTTGGGTGGTGAGGATTTCGA 1106044
Score = 100 bits (110), Expect = 4e-16
Identities = 447/693 (65%), Gaps = 29/693 (4%)
Strand=Plus/Minus
Query 78068 TTTAATGCAGGTACTCCCC-GTCCACAGATGTCATCTTGTTTCCTACTTGCAAATAAGGA 78126
|| || || ||||| || | || | ||| |||| || || ||||| | | | |||||
Sbjct 2839799 TTCAACGCTGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGA 2839741
Query 78127 GGACTCTATTAATGGTATATACGGGACTCTCACAGAG-TGTGCTCAGATTTCTAAGTGGG 78185
||||||||| | ||||| |||| || |||| ||| || || ||| || ||| ||
Sbjct 2839740 AGACTCTATTGAGGGTATCTACGACACCCTCA-AGACCTGCGCCATGATCTCCAAGATGG 2839682
Query 78186 CTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACAAGTCCAGGATTAGAGGAA 78245
||||||| || ||||| | |||| | ||||||| | ||| ||| || |
Sbjct 2839681 CTGGTGGCATTGGTCTCAACGCTCACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCA 2839622
Query 78246 CTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCACGCT 78305
| || || || | || | ||||| |||||| | || || || || || ||||
Sbjct 2839621 CCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCT 2839562
Query 78306 ATGTCAACCAAGCGGGTCGTAGGAAG------GGGTCATTCGCTATGTACCTTGAACCTT 78359
| ||| |||| |||| | | ||| || | |||||||| |||||||| || |
Sbjct 2839561 ACGTCGACCA---GGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATTTACCTTGAGCCGT 2839505
Query 78360 GGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGTGACGAGGAAGCTC 78419
|||||||||| || | || || |||| | || ||||| || | ||||| | |
Sbjct 2839504 GGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCC 2839445
Query 78420 GATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAGG 78479
| | | || | ||| ||| | ||||| || ||||| || ||||||||||| || |
Sbjct 2839444 GTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGA-G 2839386
Query 78480 AAGGA-GGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAGATGTATAC 78538
||| | | | ||| | || | || || || || || || | || ||
Sbjct 2839385 AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTAT 2839326
Query 78539 GGGGAAGAATTCGAAAAATTGTACACTAAATACGA-----AGAGGAAGGTCTCGCTATTA 78593
|| || || ||||| |||||| || ||||| || | |||| |||| |
Sbjct 2839325 GGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGG-GTCGC----A 2839271
Query 78594 AGACAATTGATGCATCTGAA-CTATGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGC 78652
|||| || | || | ||| || ||| | || || || | ||| || ||||| |||
Sbjct 2839270 AGACCATCAAGGC-CCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGC 2839212
Query 78653 ACCCCGTATATGCTATACAAAGACAGCTG-TAACAGAAAGTCTAACCAAAAGAACCTAGG 78711
| ||| | ||||| ||||| || |||| ||| | ||| ||||| |||||||| ||
Sbjct 2839211 AACCCCTTCATGCTTTACAAGGA-TGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 2839153
Query 78712 TGTCATCAAAAGCTCTAACCTTTGCACAGAAAT 78744
||| ||||| ||||||||||| || ||
Sbjct 2839152 AACTATCCGCAGCTCCAACCTTTGCACTGAGAT 2839120
>seq10
Length=4416304
Score = 178 bits (196), Expect = 2e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 3556632 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 3556573
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||| || || ||||| |||||||| ||||| |||
Sbjct 3556572 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 3556513
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || || || || ||||| || || || || |||||| | || ||||||
Sbjct 3556512 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3556453
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| || |||||||| || || ||||| || || | || || ||||||
Sbjct 3556452 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 3556405
>seq8
Length=5005225
Score = 93.3 bits (102), Expect = 6e-14
Identities = 271/404 (67%), Gaps = 19/404 (5%)
Strand=Plus/Plus
Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608
||||| ||||| || | || ||||| | || || || ||||| || | || ||
Sbjct 2269785 ATCCCTCGTGGCGCCATCCTTGCCGGACCTCCAGGAACCGGTAAGACGTTGCTTGCCAAG 2269844
Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATC 198665
|| | ||| || || || |||| ||||| |||||| | || |||| ||||||| ||
Sbjct 2269845 GCCACCGCCGGCGAGTCTGGTGTTCCCTT-CTTCAGCG-TCAGCGGTTCCGAGTTTG-TC 2269901
Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725
|||||||| || ||||| ||| || | || || || || |||| | | || ||| |
Sbjct 2269902 GAGATGTTTGTCGGTGTCGGTCCTTCAAGAGTGCGAGACCTGTTTGCGAATGCCCGTAAG 2269961
Query 198726 AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGT--AAGAAGCGTGGTG 198783
| | || || ||||||||||| |||||||| ||||| ||||| | ||| || |
Sbjct 2269962 AGTGCCCCCTGCATCATCTTCATCGATGAGATCGACGCCATTGGTCGATCAAGACAGGAG 2270021
Query 198784 G--AACTACTACACCTGGTAATGATGAGCGTG-AGCAGACGATTAACCAGCTTCTCACTG 198840
| ||| | ||| || || ||||| | |||| || | |||||| | | || |
Sbjct 2270022 GGTAAC-CGAATGGGTGGCAACGACGAGCGCGAAGCA-ACTCTGAACCAGATCTTGACCG 2270079
Query 198841 AGATGGATGGTTTTGACA---ATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAGGA 198897
||||||| ||||| ||| | ||| | || | || || | |||| || || ||
Sbjct 2270080 AGATGGACGGTTTCAACACCCAGGAG-CAGG--TTGTTGTCCTCGCTGGCACCAACAGAG 2270136
Query 198898 TTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGAC 198941
|| ||||| || | || ||| | |||||||| || ||||||
Sbjct 2270137 CCGACATCCTTGACAAGGCGCTGATGCGTCCCGGCCGTTTCGAC 2270180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657862120408480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |