Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq17 120 9e-22
seq6 114 4e-20
seq4 104 7e-17
>seq17
Length=2392175
Score = 120 bits (132), Expect = 9e-22
Identities = 188/265 (71%), Gaps = 8/265 (3%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||| || || || || ||||| ||||| || |
Sbjct 1460591 CTTGACAAGACGACGCTGGATGTAACCGGTCTCAGCGGTCTTGACAGCGGTATCGATCAA 1460532
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| | | |||| |||| || |||||||| | || || ||| || || | | |
Sbjct 1460531 ACCTTCTCTACCAGCCATGGCGTGGAAGAAAAATTCACTAGG-CGTGAGACCACGGAGAT 1460473
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| |||| ||||||||||| ||||||||||| | |||| ||| || || || ||||
Sbjct 1460472 ATGAGTTCTCGACGAAACCACGAGCCTCGGGCGAGTAGTCGTCCTTTGTGAAATGCGGCA 1460413
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCA 302818
||| | || || | ||| | || || |||||||| || ||| | ||||||| |||
Sbjct 1460412 AGGTGCGGTACTTGAAACCGAAAGGAATGCGCTTTCCTTCGACGATTTGCTGTCCGACCA 1460353
Query 302819 GGCACGAAATCATCTGCGAAATATT 302843
|| | | ||||||| ||||| ||
Sbjct 1460352 GG---GCAGTCATCTGGGAAATGTT 1460331
>seq6
Length=6290098
Score = 114 bits (126), Expect = 4e-20
Identities = 559/882 (63%), Gaps = 13/882 (1%)
Strand=Plus/Plus
Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685
||| ||| || | |||||| ||| ||||| || || ||| || || | |||||||
Sbjct 2839106 CGCAGTACTCAATGATCTCAGTGCAAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCT 2839165
Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745
|||| || | ||| |||||||||||| || ||| | ||| | || ||||| |||
Sbjct 2839166 GGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCT 2839225
Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805
| || || || || ||| || | |||| || || |||| |||| |
Sbjct 2839226 GAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCT 2839285
Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865
| ||| || ||| |||| | | | ||||| || || || ||| ||| ||||
Sbjct 2839286 CGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAG 2839345
Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAA 155922
|||||| || |||||| | || | ||| || || ||| | | || ||| |
Sbjct 2839346 GGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACT---CTCTTCATGA 2839402
Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982
| | ||| ||| | ||| ||||||||| | || |||||| | ||| |
Sbjct 2839403 ACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCAT 2839462
Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042
| ||||| || | || | ||| || | || | || ||||| || || ||||
Sbjct 2839463 GGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAG 2839522
Query 156043 CAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099
| ||| ||| | |||| |||||||| || || || |||||||| || || ||||
Sbjct 2839523 CGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGA 2839582
Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159
||| ||||| ||||| | ||| || || ||||| ||||| ||| ||||| || ||||
Sbjct 2839583 CACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAG 2839642
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCG 156218
| |||| | ||| | || ||||| ||||| | |||| || || || |||
Sbjct 2839643 TGGCACGAATACGGTGAGCGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATGGCG 2839701
Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278
|| ||| | || | | | ||||| |||||||| || || | ||| | || ||
Sbjct 2839702 CAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAG 2839761
Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338
|| ||| | || | || || ||||||||||| ||||| || | ||||| |
Sbjct 2839762 CATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTG 2839821
Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTG 156397
|| |||| | ||||| | ||| ||||| | | ||| | ||| |||| |
Sbjct 2839822 AAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAG 2839881
Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457
|| | || | || | ||| ||| ||||| || | ||| ||||| |||||||
Sbjct 2839882 -ATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG 2839940
Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|| ||||||| | ||||| || || || ||||| ||
Sbjct 2839941 CTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTA 2839982
>seq4
Length=5732808
Score = 104 bits (114), Expect = 7e-17
Identities = 339/515 (66%), Gaps = 24/515 (5%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|| || || | |||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 2299572 GCGCCATGAGCAATCATGCAATCACGCTCCATCTCTCCGAAACGAAGACCTCCATCGCGA 2299631
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAGGACC----GATGGAGCGG 251598
|| | |||||| |||| || | || | ||| | | || || || | |||||
Sbjct 2299632 GCACGACCCTCCACAGGTTGCCTGGTCATGATCTGAACA--GGTCCACGCGCACGAGCGT 2299689
Query 251599 CTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAG 251658
|| ||| || | ||||| || |||||||||||| | | || || | ||||
Sbjct 2299690 GAATCTTG----TCGTCCACCATGTGGCGCAGACGCTGGTAGTAAGTCGGTCCAAAGAAG 2299745
Query 251659 AT----GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATT 251714
| ||||| || || || ||||| | | || ||||| | ||| ||| |
Sbjct 2299746 ACCTGGGCTCGCAGC---TTCCTG-CCAGTGTGGCCATTGTACATGATCTCGAATCCTCT 2299801
Query 251715 AGATTCATAACCAAGTT-TCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAA 251773
|||| ||| || | | || | | ||| | | | | | | || || | |
Sbjct 2299802 CGATTGATATCCTTGATCTCGGAGGAGCTGCGAGACTGAGTCGACTGTCACATCTG-TGA 2299860
Query 251774 AACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTT 251833
|| |||| |||| || | | ||| || || | ||||||| | | |||
Sbjct 2299861 AAGGGGTGGCGTCGCCCTCCATTCCCTTTAATGTCGAGACTTTGCTGAGTAAACACTCGA 2299920
Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893
||| ||||| || ||||||||| ||||| || || ||||||||||||||||| ||
Sbjct 2299921 TCAAGTGGGCAATGGTCATACGAGACGGAATTGCGTGAGGATTGATGATGATGTCCGGCG 2299980
Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCC 251952
| | || || | || ||||||||||| | || | | |||| || || || || |||
Sbjct 2299981 TGATGCCCTCGCCGGTAAAGGGCATATCTTCTTGC-CGATAAGTGACACCGATGGTACCC 2300039
Query 251953 TTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|| || |||||||| || ||||||||||||||
Sbjct 2300040 TTCTGGCCGTGACGTGAGGCAAACTTATCACCAAT 2300074
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816958839458
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |