Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq17 120 9e-22 seq6 114 4e-20 seq4 104 7e-17 >seq17 Length=2392175 Score = 120 bits (132), Expect = 9e-22 Identities = 188/265 (71%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||| || || || || ||||| ||||| || | Sbjct 1460591 CTTGACAAGACGACGCTGGATGTAACCGGTCTCAGCGGTCTTGACAGCGGTATCGATCAA 1460532 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | | |||| |||| || |||||||| | || || ||| || || | | | Sbjct 1460531 ACCTTCTCTACCAGCCATGGCGTGGAAGAAAAATTCACTAGG-CGTGAGACCACGGAGAT 1460473 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| |||| ||||||||||| ||||||||||| | |||| ||| || || || |||| Sbjct 1460472 ATGAGTTCTCGACGAAACCACGAGCCTCGGGCGAGTAGTCGTCCTTTGTGAAATGCGGCA 1460413 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCA 302818 ||| | || || | ||| | || || |||||||| || ||| | ||||||| ||| Sbjct 1460412 AGGTGCGGTACTTGAAACCGAAAGGAATGCGCTTTCCTTCGACGATTTGCTGTCCGACCA 1460353 Query 302819 GGCACGAAATCATCTGCGAAATATT 302843 || | | ||||||| ||||| || Sbjct 1460352 GG---GCAGTCATCTGGGAAATGTT 1460331 >seq6 Length=6290098 Score = 114 bits (126), Expect = 4e-20 Identities = 559/882 (63%), Gaps = 13/882 (1%) Strand=Plus/Plus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | |||||| ||| ||||| || || ||| || || | ||||||| Sbjct 2839106 CGCAGTACTCAATGATCTCAGTGCAAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCT 2839165 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | ||| |||||||||||| || ||| | ||| | || ||||| ||| Sbjct 2839166 GGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCT 2839225 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || || || ||| || | |||| || || |||| |||| | Sbjct 2839226 GAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCT 2839285 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 | ||| || ||| |||| | | | ||||| || || || ||| ||| |||| Sbjct 2839286 CGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAG 2839345 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAA 155922 |||||| || |||||| | || | ||| || || ||| | | || ||| | Sbjct 2839346 GGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACT---CTCTTCATGA 2839402 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982 | | ||| ||| | ||| ||||||||| | || |||||| | ||| | Sbjct 2839403 ACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCAT 2839462 Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042 | ||||| || | || | ||| || | || | || ||||| || || |||| Sbjct 2839463 GGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAG 2839522 Query 156043 CAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099 | ||| ||| | |||| |||||||| || || || |||||||| || || |||| Sbjct 2839523 CGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGA 2839582 Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159 ||| ||||| ||||| | ||| || || ||||| ||||| ||| ||||| || |||| Sbjct 2839583 CACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAG 2839642 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCG 156218 | |||| | ||| | || ||||| ||||| | |||| || || || ||| Sbjct 2839643 TGGCACGAATACGGTGAGCGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATGGCG 2839701 Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278 || ||| | || | | | ||||| |||||||| || || | ||| | || || Sbjct 2839702 CAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAG 2839761 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 || ||| | || | || || ||||||||||| ||||| || | ||||| | Sbjct 2839762 CATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTG 2839821 Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTG 156397 || |||| | ||||| | ||| ||||| | | ||| | ||| |||| | Sbjct 2839822 AAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAG 2839881 Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457 || | || | || | ||| ||| ||||| || | ||| ||||| ||||||| Sbjct 2839882 -ATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG 2839940 Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| | ||||| || || || ||||| || Sbjct 2839941 CTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTA 2839982 >seq4 Length=5732808 Score = 104 bits (114), Expect = 7e-17 Identities = 339/515 (66%), Gaps = 24/515 (5%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || || || | |||||| |||||||||||||| || |||||||||||||| ||||||||| Sbjct 2299572 GCGCCATGAGCAATCATGCAATCACGCTCCATCTCTCCGAAACGAAGACCTCCATCGCGA 2299631 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAGGACC----GATGGAGCGG 251598 || | |||||| |||| || | || | ||| | | || || || | ||||| Sbjct 2299632 GCACGACCCTCCACAGGTTGCCTGGTCATGATCTGAACA--GGTCCACGCGCACGAGCGT 2299689 Query 251599 CTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAG 251658 || ||| || | ||||| || |||||||||||| | | || || | |||| Sbjct 2299690 GAATCTTG----TCGTCCACCATGTGGCGCAGACGCTGGTAGTAAGTCGGTCCAAAGAAG 2299745 Query 251659 AT----GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATT 251714 | ||||| || || || ||||| | | || ||||| | ||| ||| | Sbjct 2299746 ACCTGGGCTCGCAGC---TTCCTG-CCAGTGTGGCCATTGTACATGATCTCGAATCCTCT 2299801 Query 251715 AGATTCATAACCAAGTT-TCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAA 251773 |||| ||| || | | || | | ||| | | | | | | || || | | Sbjct 2299802 CGATTGATATCCTTGATCTCGGAGGAGCTGCGAGACTGAGTCGACTGTCACATCTG-TGA 2299860 Query 251774 AACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTT 251833 || |||| |||| || | | ||| || || | ||||||| | | ||| Sbjct 2299861 AAGGGGTGGCGTCGCCCTCCATTCCCTTTAATGTCGAGACTTTGCTGAGTAAACACTCGA 2299920 Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893 ||| ||||| || ||||||||| ||||| || || ||||||||||||||||| || Sbjct 2299921 TCAAGTGGGCAATGGTCATACGAGACGGAATTGCGTGAGGATTGATGATGATGTCCGGCG 2299980 Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCC 251952 | | || || | || ||||||||||| | || | | |||| || || || || ||| Sbjct 2299981 TGATGCCCTCGCCGGTAAAGGGCATATCTTCTTGC-CGATAAGTGACACCGATGGTACCC 2300039 Query 251953 TTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || |||||||| || |||||||||||||| Sbjct 2300040 TTCTGGCCGTGACGTGAGGCAAACTTATCACCAAT 2300074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816958839458