Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq6 183 4e-40
seq9 140 4e-27
seq8 122 1e-21
seq20 111 2e-18
seq13 105 8e-17
>seq6
Length=6290098
Score = 183 bits (202), Expect = 4e-40
Identities = 333/489 (68%), Gaps = 15/489 (3%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||||||||| || |||||||| | || ||||| ||
Sbjct 2839551 CTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 2839610
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||||||| || | |||| ||| | ||| || | ||| ||| | ||
Sbjct 2839611 GGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAGACC 2839670
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || ||| ||||||||| | ||||| ||||| ||||||||||| |||||
Sbjct 2839671 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 2839730
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||| ||||| || || || || | || ||
Sbjct 2839731 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 2839790
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || |||||| |||| | |||||| || ||||||
Sbjct 2839791 AGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 2839850
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| || |||| || || || ||||| || ||
Sbjct 2839851 CTCGATGACGCGC------------TCGACGTTATCA---CCCCAGATGCCGACTGCAAC 2839895
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| | |||| | | ||| | |||| |||||| ||
Sbjct 2839896 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGA 2839955
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || |||| ||| ||| ||||| || || |||||||||| | |||||
Sbjct 2839956 TCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 2840015
Query 1630545 GGCGTCGAG 1630553
| |||||
Sbjct 2840016 AGAATCGAG 2840024
Score = 170 bits (188), Expect = 2e-36
Identities = 271/389 (70%), Gaps = 6/389 (2%)
Strand=Plus/Minus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||||||| ||| |||| ||||| ||||| ||||| |
Sbjct 5572573 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 5572514
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
||| ||||| |||| |||||||||||| || | || ||||| || |||||| || || |
Sbjct 5572513 CTGACCGAGTCCGATATCCAGCCTCAGCTGAACCGCCGCCGCCCCGGCCAGAGCTCAATC 5572454
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| ||||| | |||||| || || ||| |||||||| || || ||| ||| ||
Sbjct 5572453 ACGACGCCCAGAAACGAGAAGGACCGTGTCGTCATCCAGAGCGGTACCGAGTTCGGTGTC 5572394
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339
|| || ||| | || | ||| | | || ||| ||||| || ||| |||||
Sbjct 5572393 ACCCTTGGCACCCCGATTGGCATGCTCGTCCAGAACGAGGACCAACGTCCCAAGGACTAC 5572334
Query 18340 TCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| || ||| | | | || || || || |||||||| | |||||| | |
Sbjct 5572333 GGCAACTCTACGATGGATATGTTCCCCCGCCCGTCCCACGCCGATTGGACCTACCTCGAG 5572274
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
||||||||| ||||||| || || ||||| || || || || ||||||||||| |
Sbjct 5572273 AAGTACGGCGTCAAGGCCTCCTCCGGCGGTGGTCGCTCCTCCGCCCGCGAGACAATTGCC 5572214
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
||||| ||||||||||| |||| |||||
Sbjct 5572213 CGCGTTGCCGCCGGCGCCCTCGCTGAGAA 5572185
Score = 105 bits (116), Expect = 8e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
|| || ||||| ||||| || || || ||||| |||||| || | | ||||||
Sbjct 5571952 GACGATAGCATTGGCGGAACCGTCACCTGCGTCATCCGCAACCCACCCTCGGCGCTCGGC 5571893
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| |||||||| |||| || ||||| ||||| ||||| |||
Sbjct 5571892 GAGCCCTGCTTCGACAAGCTCGAGGCCTCGCTTGCACACGCTATGCTCAGCATCCCCGCC 5571833
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194
|| ||||| |||||||| ||| ||| ||||
Sbjct 5571832 ACAAAGGGCTTCGAGATCGGCTCCGGCTTTG 5571802
>seq9
Length=4851470
Score = 140 bits (154), Expect = 4e-27
Identities = 94/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| |||||||||||||| ||||| | || |||||| | || ||||||||||
Sbjct 3843077 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGCAAGACCGTTGCCAACATGA 3843018
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 3843017 TCAAGGGCAAGTCACCCGAGGAGATCCGCAAGACCTTCAACATCA 3842973
Score = 120 bits (132), Expect = 4e-21
Identities = 143/192 (74%), Gaps = 3/192 (2%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| || ||| | |||||| |||| || |||||||||||||| |||||
Sbjct 3450665 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 3450606
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||||||||||| | ||| || ||| ||||| ||||| || ||||||||
Sbjct 3450605 CTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAA 3450546
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| | | || |||| ||| |||| | || | ||| | | |||||||||||| |||||
Sbjct 3450545 GGCAACCAGACGCTGGGCGAAGGAG--GA-GTTCTCATCGCTGATCCACTTCAGGGCCCA 3450489
Query 869359 GTCGGCCTTTTT 869370
||| ||||| ||
Sbjct 3450488 GTCAGCCTTCTT 3450477
Score = 114 bits (126), Expect = 2e-19
Identities = 173/244 (71%), Gaps = 4/244 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| ||| || |||||||||||||| | || |||||
Sbjct 3450979 GCCTTCTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 3450920
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | ||||||| ||| ||| || |||||||
Sbjct 3450919 TTCTCCATGAAGTCGAAGGGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC 3450860
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
|| ||||||||||| || ||||| |||||||| ||| | | || |||||||||||
Sbjct 3450859 --AGGAGGCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 3450802
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|| || ||||| | ||| | | ||||| | ||| |||| |||||| || ||||
Sbjct 3450801 GAAGAGCGCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGA 3450742
Query 868929 TGAT 868932
||||
Sbjct 3450741 TGAT 3450738
>seq8
Length=5005225
Score = 122 bits (134), Expect = 1e-21
Identities = 168/233 (72%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| || || ||||||| | ||| |||| | || |||||| | |
Sbjct 2432914 TCGACGTCGTTCGTAACCGCATCAAGGGCTTCGCGCAGAAGAAGGTCACCCTGCCCCAGG 2432973
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| ||||||||| | |||||||||||||||||||| || | || || | || || ||||
Sbjct 2432974 GTCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCTCAACAGG 2433033
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
|||| || || ||||||| || |||||||||||||||| ||| | || ||||||
Sbjct 2433034 CCCTCCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 2433093
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCT 1574238
||| | | ||||||| | || | |||||| |||||||| || ||||
Sbjct 2433094 AGTCCAACAAGATCATCGAACCGCTGC--AGTCGCGATGCGCCATCCTCCGCT 2433144
>seq20
Length=955769
Score = 111 bits (122), Expect = 2e-18
Identities = 248/362 (69%), Gaps = 13/362 (4%)
Strand=Plus/Minus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||| ||||||| | |||||||| || || |||| | | | |||||||||||||||||||
Sbjct 136220 GGCCGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 136162
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||||||||| | |||| || || ||||
Sbjct 136161 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGATTCCGTGGTGC 136102
Query 1726812 GCGCGCCCACGGCGCCCCACGCC-ACCAGGTCTGCCA---AATAAGGGGCCACCAGAGGA 1726867
| || || | ||| || |||| | | ||| || | | | |||| | | |
Sbjct 136101 GGGCACCGATGGCACCA-ACGCTGATGAAGTCGGCGAGGAACTGGGGGGAGATCGT--GT 136045
Query 1726868 CTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGG 1726927
| ||| | |||| ||| | |||| || | ||||| | |||||||| || || ||
Sbjct 136044 C-GAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGTGGTGAGATCGCTGAAGAGCTGG 135989
Query 1726928 CGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCC 1726987
|| || |||||| | | | | | | ||||| ||| |||||| ||
Sbjct 135988 CGGGAGATGCGCAGGCCCTTGTTGATCTTGAAAGTGGAGTCGATGTCCGGGTCGTTGATG 135929
Query 1726988 AGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCAA 1727047
||||||||||| |||||||| ||||||||||| |||| ||||||||||||| |||||
Sbjct 135928 AGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGATGACGCAG 135869
Query 1727048 AG 1727049
||
Sbjct 135868 AG 135867
>seq13
Length=3673828
Score = 105 bits (116), Expect = 8e-17
Identities = 150/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439
||||| ||| || ||||| ||||||| || | || || ||| | ||||| ||
Sbjct 1523764 CCGGTGCTGCCGAACCCGCCAGCGCCGCGCACGCTTTCCTCGAGCTCGGCGACCTCGACG 1523705
Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499
|||||| | || ||||| | | |||||||||||| ||||||| | ||
Sbjct 1523704 ACCTCGGGAGTGAAGATGCGCTCGATAATGAGCTGGGCGATGCGG---TCGCCCTCGGCA 1523648
Query 1572500 ACGTGG---TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556
|| | | |||| ||||| |||||||||||| | ||| |||| |||||| ||||||
Sbjct 1523647 ACCTCGAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCG 1523588
Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATG 1572586
|||||||||||||| |||||| |||||||
Sbjct 1523587 GCATCGATGACGCCGGCGCCGGTGTCGATG 1523558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107136409800778
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