Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 183 4e-40 seq9 140 4e-27 seq8 122 1e-21 seq20 111 2e-18 seq13 105 8e-17 >seq6 Length=6290098 Score = 183 bits (202), Expect = 4e-40 Identities = 333/489 (68%), Gaps = 15/489 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||||||||| || |||||||| | || ||||| || Sbjct 2839551 CTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 2839610 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||||||| || | |||| ||| | ||| || | ||| ||| | || Sbjct 2839611 GGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAGACC 2839670 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || ||| ||||||||| | ||||| ||||| ||||||||||| ||||| Sbjct 2839671 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 2839730 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||| ||||| || || || || | || || Sbjct 2839731 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 2839790 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || |||||| |||| | |||||| || |||||| Sbjct 2839791 AGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 2839850 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| || |||| || || || ||||| || || Sbjct 2839851 CTCGATGACGCGC------------TCGACGTTATCA---CCCCAGATGCCGACTGCAAC 2839895 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| | |||| | | ||| | |||| |||||| || Sbjct 2839896 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGA 2839955 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || |||| ||| ||| ||||| || || |||||||||| | ||||| Sbjct 2839956 TCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 2840015 Query 1630545 GGCGTCGAG 1630553 | ||||| Sbjct 2840016 AGAATCGAG 2840024 Score = 170 bits (188), Expect = 2e-36 Identities = 271/389 (70%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| ||| |||| ||||| ||||| ||||| | Sbjct 5572573 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 5572514 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 ||| ||||| |||| |||||||||||| || | || ||||| || |||||| || || | Sbjct 5572513 CTGACCGAGTCCGATATCCAGCCTCAGCTGAACCGCCGCCGCCCCGGCCAGAGCTCAATC 5572454 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | ||||| | |||||| || || ||| |||||||| || || ||| ||| || Sbjct 5572453 ACGACGCCCAGAAACGAGAAGGACCGTGTCGTCATCCAGAGCGGTACCGAGTTCGGTGTC 5572394 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339 || || ||| | || | ||| | | || ||| ||||| || ||| ||||| Sbjct 5572393 ACCCTTGGCACCCCGATTGGCATGCTCGTCCAGAACGAGGACCAACGTCCCAAGGACTAC 5572334 Query 18340 TCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | || ||| | | | || || || || |||||||| | |||||| | | Sbjct 5572333 GGCAACTCTACGATGGATATGTTCCCCCGCCCGTCCCACGCCGATTGGACCTACCTCGAG 5572274 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||||||| ||||||| || || ||||| || || || || ||||||||||| | Sbjct 5572273 AAGTACGGCGTCAAGGCCTCCTCCGGCGGTGGTCGCTCCTCCGCCCGCGAGACAATTGCC 5572214 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||||| ||||||||||| |||| ||||| Sbjct 5572213 CGCGTTGCCGCCGGCGCCCTCGCTGAGAA 5572185 Score = 105 bits (116), Expect = 8e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 || || ||||| ||||| || || || ||||| |||||| || | | |||||| Sbjct 5571952 GACGATAGCATTGGCGGAACCGTCACCTGCGTCATCCGCAACCCACCCTCGGCGCTCGGC 5571893 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| |||| || ||||| ||||| ||||| ||| Sbjct 5571892 GAGCCCTGCTTCGACAAGCTCGAGGCCTCGCTTGCACACGCTATGCTCAGCATCCCCGCC 5571833 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194 || ||||| |||||||| ||| ||| |||| Sbjct 5571832 ACAAAGGGCTTCGAGATCGGCTCCGGCTTTG 5571802 >seq9 Length=4851470 Score = 140 bits (154), Expect = 4e-27 Identities = 94/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| |||||||||||||| ||||| | || |||||| | || |||||||||| Sbjct 3843077 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGCAAGACCGTTGCCAACATGA 3843018 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 3843017 TCAAGGGCAAGTCACCCGAGGAGATCCGCAAGACCTTCAACATCA 3842973 Score = 120 bits (132), Expect = 4e-21 Identities = 143/192 (74%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| |||| || |||||||||||||| ||||| Sbjct 3450665 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 3450606 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||||| | ||| || ||| ||||| ||||| || |||||||| Sbjct 3450605 CTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAA 3450546 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | || |||| ||| |||| | || | ||| | | |||||||||||| ||||| Sbjct 3450545 GGCAACCAGACGCTGGGCGAAGGAG--GA-GTTCTCATCGCTGATCCACTTCAGGGCCCA 3450489 Query 869359 GTCGGCCTTTTT 869370 ||| ||||| || Sbjct 3450488 GTCAGCCTTCTT 3450477 Score = 114 bits (126), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| ||| || |||||||||||||| | || ||||| Sbjct 3450979 GCCTTCTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 3450920 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||||| ||| ||| || ||||||| Sbjct 3450919 TTCTCCATGAAGTCGAAGGGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC 3450860 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || ||||||||||| || ||||| |||||||| ||| | | || ||||||||||| Sbjct 3450859 --AGGAGGCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 3450802 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || ||||| | ||| | | ||||| | ||| |||| |||||| || |||| Sbjct 3450801 GAAGAGCGCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGA 3450742 Query 868929 TGAT 868932 |||| Sbjct 3450741 TGAT 3450738 >seq8 Length=5005225 Score = 122 bits (134), Expect = 1e-21 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| || || ||||||| | ||| |||| | || |||||| | | Sbjct 2432914 TCGACGTCGTTCGTAACCGCATCAAGGGCTTCGCGCAGAAGAAGGTCACCCTGCCCCAGG 2432973 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | |||||||||||||||||||| || | || || | || || |||| Sbjct 2432974 GTCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCTCAACAGG 2433033 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 |||| || || ||||||| || |||||||||||||||| ||| | || |||||| Sbjct 2433034 CCCTCCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 2433093 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCT 1574238 ||| | | ||||||| | || | |||||| |||||||| || |||| Sbjct 2433094 AGTCCAACAAGATCATCGAACCGCTGC--AGTCGCGATGCGCCATCCTCCGCT 2433144 >seq20 Length=955769 Score = 111 bits (122), Expect = 2e-18 Identities = 248/362 (69%), Gaps = 13/362 (4%) Strand=Plus/Minus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||| ||||||| | |||||||| || || |||| | | | ||||||||||||||||||| Sbjct 136220 GGCCGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 136162 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| || || |||| Sbjct 136161 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGATTCCGTGGTGC 136102 Query 1726812 GCGCGCCCACGGCGCCCCACGCC-ACCAGGTCTGCCA---AATAAGGGGCCACCAGAGGA 1726867 | || || | ||| || |||| | | ||| || | | | |||| | | | Sbjct 136101 GGGCACCGATGGCACCA-ACGCTGATGAAGTCGGCGAGGAACTGGGGGGAGATCGT--GT 136045 Query 1726868 CTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGG 1726927 | ||| | |||| ||| | |||| || | ||||| | |||||||| || || || Sbjct 136044 C-GAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGTGGTGAGATCGCTGAAGAGCTGG 135989 Query 1726928 CGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCC 1726987 || || |||||| | | | | | | ||||| ||| |||||| || Sbjct 135988 CGGGAGATGCGCAGGCCCTTGTTGATCTTGAAAGTGGAGTCGATGTCCGGGTCGTTGATG 135929 Query 1726988 AGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCAA 1727047 ||||||||||| |||||||| ||||||||||| |||| ||||||||||||| ||||| Sbjct 135928 AGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGATGACGCAG 135869 Query 1727048 AG 1727049 || Sbjct 135868 AG 135867 >seq13 Length=3673828 Score = 105 bits (116), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439 ||||| ||| || ||||| ||||||| || | || || ||| | ||||| || Sbjct 1523764 CCGGTGCTGCCGAACCCGCCAGCGCCGCGCACGCTTTCCTCGAGCTCGGCGACCTCGACG 1523705 Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499 |||||| | || ||||| | | |||||||||||| ||||||| | || Sbjct 1523704 ACCTCGGGAGTGAAGATGCGCTCGATAATGAGCTGGGCGATGCGG---TCGCCCTCGGCA 1523648 Query 1572500 ACGTGG---TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556 || | | |||| ||||| |||||||||||| | ||| |||| |||||| |||||| Sbjct 1523647 ACCTCGAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCG 1523588 Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATG 1572586 |||||||||||||| |||||| ||||||| Sbjct 1523587 GCATCGATGACGCCGGCGCCGGTGTCGATG 1523558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136409800778