Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8 150 3e-30 seq6 149 1e-29 seq9 136 6e-26 seq13 93.3 7e-13 >seq8 Length=5005225 Score = 150 bits (166), Expect = 3e-30 Identities = 213/297 (72%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 2019147 GACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAA--TCGACCTGCCGCC 2019202 |||||||| |||| ||||||| | || ||| | ||||| || |||||| | Sbjct 2432916 GACGTCGTTCGTAACCGCATCAAGGGCTTCGCGC----AGAAGAAGGTCACCCTGCCCCA 2432971 Query 2019203 CGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCA 2019262 || ||||||||| | |||||||||| ||||||||| || | || || | || || || Sbjct 2432972 GGGTCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCTCAACA 2433031 Query 2019263 GGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAA 2019322 ||||||||| ||| ||||||| ||| ||||||||||||| || || | |||||||| Sbjct 2433032 GGCCCTCCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAA 2433091 Query 2019323 CACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCG 2019382 | ||| | | |||||||| | || ||| || ||||||||| | |||| || || Sbjct 2433092 CCAGTCCAACAAGATCATCGAACCGCTGCAGTCGCGATGCGCCATCCTCCGCTACGCCCG 2433151 Query 2019383 CCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 || ||||||| ||| ||| | ||| |||| | || || || || |||||||| Sbjct 2433152 ACTTACCGACGAGCAGGTCGTCAAGCGACTGCTGCAAATCATTGAAGCTGAAAAGGT 2433208 >seq6 Length=6290098 Score = 149 bits (164), Expect = 1e-29 Identities = 335/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||||||||| || |||||||| | | ||||| || Sbjct 2839551 CTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 2839610 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||||||| || | |||| ||| | ||| || | ||| ||| | || Sbjct 2839611 GGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAGACC 2839670 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || ||| ||||||||| | ||||| | || || || |||||||| ||||| Sbjct 2839671 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 2839730 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776 || ||||| |||||||||| | || ||||| || || || ||| | | || Sbjct 2839731 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 2839787 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 || || |||||||| ||||| | || ||| | ||| ||||||| | ||| Sbjct 2839788 ACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTA 2839847 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 ||| ||| |||||| | ||||| || || || ||||| || Sbjct 2839848 GGTCTCGATGACGCGC------------TCGACGTTATCA---CCCCAGATGCCGACTGC 2839892 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956 || ||||||||||||| |||||||| |||| | | | | | |||| |||||| Sbjct 2839893 AACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTA 2839952 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 || | ||||||| | ||| ||||| |||| | |||||| |||| | || Sbjct 2839953 TGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAAT 2840012 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||| | ||||| | |||||||| Sbjct 2840013 GGCAGAATCGAGCTCTTCCTTGTG 2840036 >seq9 Length=4851470 Score = 136 bits (150), Expect = 6e-26 Identities = 93/105 (89%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| ||||||||||| |||||||| | || ||||||||||| |||||| | | Sbjct 3843077 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGCAAGACCGTTGCCAACATGA 3843018 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 3843017 TCAAGGGCAAGTCACCCGAGGAGATCCGCAAGACCTTCAACATCA 3842973 Score = 114 bits (126), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| ||| || |||||||||||||| | || ||||| |||||| | ||| Sbjct 3450961 ACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAG 3450902 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGCGGTCGGCGA 794034 ||||||| | | |||| ||| ||| || ||||||| || ||||||||||| | Sbjct 3450901 GGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AGGAGGCGGTCGGCAA 3450844 Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCG 794094 |||| ||||||||||| ||| | | || ||||||||||| || || |||||| | Sbjct 3450843 CGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCAGGGCAGAG 3450784 Query 794095 ACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||| ||| ||||| | ||| |||| |||||| || | |||||| Sbjct 3450783 CCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGAT 3450738 Score = 107 bits (118), Expect = 3e-17 Identities = 98/121 (81%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| |||||| ||||||| ||| | || | || ||||||| |||||||||||| Sbjct 3450407 GTGTCAATGGCGTTGAAGAGGTAGGTGCGCTGCG-CGGGCTCCTTGATGTAGGTGTCGAT 3450349 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||||| ||||||||||| ||||||||||| || || |||||||||||| || ||||| Sbjct 3450348 GAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 3450289 Query 794667 G 794667 | Sbjct 3450288 G 3450288 Score = 102 bits (112), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| || |||||||||||||| ||||| Sbjct 3450665 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 3450606 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||||| ||| || ||| ||||| ||||| || |||||||| Sbjct 3450605 CTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAA 3450546 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || || |||| ||| || | | | ||| | | |||||||||||| ||||| Sbjct 3450545 GGCAACCAGACGCTGGGCGAAGGAG---GAGTTCTCATCGCTGATCCACTTCAGGGCCCA 3450489 Query 794520 CTCTGCCTTTTT 794531 || ||||| || Sbjct 3450488 GTCAGCCTTCTT 3450477 >seq13 Length=3673828 Score = 93.3 bits (102), Expect = 7e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 2017545 TCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCCCACGACGTGATCGGCGTCGGTATGG 2017604 ||||| | | ||||||||| || |||| || | || || ||||| ||||| ||| Sbjct 1523683 TCGATAATGAGCTGGGCGATGCGGTCGCCCTCGGCAACCTCGAAATCGGTGTCGGCGTGG 1523624 Query 2017605 TTAAAGAGCATGACGCCAACCTCGCCTCGATAGTCGGCATCGATGACGCCGGCGCCGACG 2017664 || ||||| | ||| |||| ||| || ||||||||||||||||||||||||||| | Sbjct 1523623 TTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCGGCATCGATGACGCCGGCGCCGGTG 1523564 Query 2017665 TCGATG 2017670 |||||| Sbjct 1523563 TCGATG 1523558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242783264926