Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq8 150 3e-30
seq6 149 1e-29
seq9 136 6e-26
seq13 93.3 7e-13
>seq8
Length=5005225
Score = 150 bits (166), Expect = 3e-30
Identities = 213/297 (72%), Gaps = 8/297 (3%)
Strand=Plus/Plus
Query 2019147 GACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAA--TCGACCTGCCGCC 2019202
|||||||| |||| ||||||| | || ||| | ||||| || |||||| |
Sbjct 2432916 GACGTCGTTCGTAACCGCATCAAGGGCTTCGCGC----AGAAGAAGGTCACCCTGCCCCA 2432971
Query 2019203 CGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCA 2019262
|| ||||||||| | |||||||||| ||||||||| || | || || | || || ||
Sbjct 2432972 GGGTCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCTCAACA 2433031
Query 2019263 GGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAA 2019322
||||||||| ||| ||||||| ||| ||||||||||||| || || | ||||||||
Sbjct 2433032 GGCCCTCCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAA 2433091
Query 2019323 CACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCG 2019382
| ||| | | |||||||| | || ||| || ||||||||| | |||| || ||
Sbjct 2433092 CCAGTCCAACAAGATCATCGAACCGCTGCAGTCGCGATGCGCCATCCTCCGCTACGCCCG 2433151
Query 2019383 CCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439
|| ||||||| ||| ||| | ||| |||| | || || || || ||||||||
Sbjct 2433152 ACTTACCGACGAGCAGGTCGTCAAGCGACTGCTGCAAATCATTGAAGCTGAAAAGGT 2433208
>seq6
Length=6290098
Score = 149 bits (164), Expect = 1e-29
Identities = 335/504 (66%), Gaps = 21/504 (4%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| ||||| || |||| ||||||||| || |||||||| | | ||||| ||
Sbjct 2839551 CTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 2839610
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||||||| || | |||| ||| | ||| || | ||| ||| | ||
Sbjct 2839611 GGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAGACC 2839670
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| || ||| ||||||||| | ||||| | || || || |||||||| |||||
Sbjct 2839671 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 2839730
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776
|| ||||| |||||||||| | || ||||| || || || ||| | | ||
Sbjct 2839731 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 2839787
Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836
|| || |||||||| ||||| | || ||| | ||| ||||||| | |||
Sbjct 2839788 ACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTA 2839847
Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896
||| ||| |||||| | ||||| || || || ||||| ||
Sbjct 2839848 GGTCTCGATGACGCGC------------TCGACGTTATCA---CCCCAGATGCCGACTGC 2839892
Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956
|| ||||||||||||| |||||||| |||| | | | | | |||| ||||||
Sbjct 2839893 AACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTA 2839952
Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016
|| | ||||||| | ||| ||||| |||| | |||||| |||| | ||
Sbjct 2839953 TGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAAT 2840012
Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040
||| | ||||| | ||||||||
Sbjct 2840013 GGCAGAATCGAGCTCTTCCTTGTG 2840036
>seq9
Length=4851470
Score = 136 bits (150), Expect = 6e-26
Identities = 93/105 (89%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||| ||||||||||| |||||||| | || ||||||||||| |||||| | |
Sbjct 3843077 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGCAAGACCGTTGCCAACATGA 3843018
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 3843017 TCAAGGGCAAGTCACCCGAGGAGATCCGCAAGACCTTCAACATCA 3842973
Score = 114 bits (126), Expect = 2e-19
Identities = 162/226 (72%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976
|| ||| ||| || |||||||||||||| | || ||||| |||||| | |||
Sbjct 3450961 ACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAG 3450902
Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGCGGTCGGCGA 794034
||||||| | | |||| ||| ||| || ||||||| || ||||||||||| |
Sbjct 3450901 GGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AGGAGGCGGTCGGCAA 3450844
Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCG 794094
|||| ||||||||||| ||| | | || ||||||||||| || || |||||| |
Sbjct 3450843 CGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCAGGGCAGAG 3450784
Query 794095 ACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140
||| ||| ||||| | ||| |||| |||||| || | ||||||
Sbjct 3450783 CCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGAT 3450738
Score = 107 bits (118), Expect = 3e-17
Identities = 98/121 (81%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| |||||| ||||||| ||| | || | || ||||||| ||||||||||||
Sbjct 3450407 GTGTCAATGGCGTTGAAGAGGTAGGTGCGCTGCG-CGGGCTCCTTGATGTAGGTGTCGAT 3450349
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|||||| ||||||||||| ||||||||||| || || |||||||||||| || |||||
Sbjct 3450348 GAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 3450289
Query 794667 G 794667
|
Sbjct 3450288 G 3450288
Score = 102 bits (112), Expect = 1e-15
Identities = 138/192 (72%), Gaps = 3/192 (2%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| || ||| | |||||| ||| || |||||||||||||| |||||
Sbjct 3450665 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 3450606
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||||||||||| ||| || ||| ||||| ||||| || ||||||||
Sbjct 3450605 CTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAA 3450546
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| | || || |||| ||| || | | | ||| | | |||||||||||| |||||
Sbjct 3450545 GGCAACCAGACGCTGGGCGAAGGAG---GAGTTCTCATCGCTGATCCACTTCAGGGCCCA 3450489
Query 794520 CTCTGCCTTTTT 794531
|| ||||| ||
Sbjct 3450488 GTCAGCCTTCTT 3450477
>seq13
Length=3673828
Score = 93.3 bits (102), Expect = 7e-13
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 2017545 TCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCCCACGACGTGATCGGCGTCGGTATGG 2017604
||||| | | ||||||||| || |||| || | || || ||||| ||||| |||
Sbjct 1523683 TCGATAATGAGCTGGGCGATGCGGTCGCCCTCGGCAACCTCGAAATCGGTGTCGGCGTGG 1523624
Query 2017605 TTAAAGAGCATGACGCCAACCTCGCCTCGATAGTCGGCATCGATGACGCCGGCGCCGACG 2017664
|| ||||| | ||| |||| ||| || ||||||||||||||||||||||||||| |
Sbjct 1523623 TTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCGGCATCGATGACGCCGGCGCCGGTG 1523564
Query 2017665 TCGATG 2017670
||||||
Sbjct 1523563 TCGATG 1523558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916242783264926
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |