Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 293 2e-74 seq10 134 1e-26 seq9 132 5e-26 seq14 109 5e-19 >seq6 Length=6290098 Score = 293 bits (324), Expect = 2e-74 Identities = 1145/1769 (65%), Gaps = 71/1769 (4%) Strand=Plus/Plus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT- 148103 |||| |||||| |||||| ||||| || |||||||| || ||||| | || | || Sbjct 2838286 TTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTG 2838345 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| |||||||| | ||||||||||| ||||| | | |||||||| | Sbjct 2838346 CGCTGGGAG---ATCTCCCAAACGGTCTTGTACAGAGCCTTGACCTCAGCGGGAATGTTG 2838402 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223 |||| ||| | || ||| | || | || | || ||| | || | | Sbjct 2838403 GGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCAC 2838462 Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283 ||| | |||| || || | | || | | || || ||||| ||||||||||| Sbjct 2838463 AGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTGACAACCTGGAACTCGCCGGCA 2838522 Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343 || || || || | || | |||| || | || || || |||||||||||||||| Sbjct 2838523 AGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAG 2838582 Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403 ||||||| || | || || |||||| || || |||| |||||||| |||| | Sbjct 2838583 ATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGC 2838642 Query 148404 TTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCAC 148463 | || || | |||||| | |||| |||||||| || || | || |||||| Sbjct 2838643 TCCTTGATCTGCTCCTTCAGTGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCAC 2838702 Query 148464 ATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCG 148523 ||||||||||| || || || || ||| ||||||||||| | ||| | || Sbjct 2838703 ATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCC 2838762 Query 148524 TGCGCCGCCGCCAGTTCGCAGCTCGCCTCG--AGCGCGCCGTAGTAAATCGTCTCGGCAA 148581 | | || ||||| | | | | | | || || ||| ||| || |||||| | Sbjct 2838763 TCCTCCTTGGCCAGCTG--AACAGACATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGA 2838820 Query 148582 TTTGCCTGTTGAG--CA-GCGCCGCCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACA 148637 | | | ||||||| || | ||| | | | | ||| | ||||| || || | Sbjct 2838821 TCTTCTTGTTGAGATCACGGGCCTCAGGAGAC----TCGAAAGGCATGCGAAGGGCGAGG 2838876 Query 148638 AACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGG 148697 || || || ||||| ||||| || || | |||||||| ||||| |||||| | | Sbjct 2838877 AAAGCATCAGCAAGACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTTGCTGTTG 2838936 Query 148698 CGCGCGCTCTCGAGCGGA-TAGTGGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCA 148755 || || ||| || ||| ||||||||| || |||||||||| |||| ||||| || | Sbjct 2838937 CGAGC-CTCGGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAG-TTGCGAACAA 2838994 Query 148756 CCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTAC---------TTGTCATCTACGA 148806 | |||| |||| | | ||| | || ||||| |||| || |||| Sbjct 2838995 CGACCTGAGTAACCTCGTGAAGCTTCTGGAAGTCGTAGACACCATCGTTGTAGTCAACGA 2839054 Query 148807 TGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGT 148866 | | || || || | || || | ||||| || || |||||| || |||| || Sbjct 2839055 AGG-TGGG--CAGAGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGT 2839111 Query 148867 ACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGC 148926 |||| | |||||| | ||| || ||| || ||| || | |||||| || |||| Sbjct 2839112 ACTCAATGATCTCAGTGCAAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGC 2839171 Query 148927 TCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTT 148986 |||||| |||| || |||||||| |||||| | || |||||| || ||| | | Sbjct 2839172 TCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCT 2839231 Query 148987 CCACTATGA---ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT--- 149040 | | ||| ||| | || | ||| || |||| || || | |||||||| Sbjct 2839232 CGAGGATGGCATACCAAAGC---TTCTGGGC-----CTTGATGGTCTT-GCGACCCTTGC 2839282 Query 149041 CCT---GCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAG 149095 ||| ||||||| | ||| | ||| |||||| ||||||| ||||| || | || Sbjct 2839283 CCTCGCGCTCGTACTTCTCGTACAAGGCC--TCGAACTCCTCGCCATAGCAGTCAGCCAG 2839340 Query 149096 ACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCAT 149155 || ||||||| | ||||||||||| | ||| || ||| | | || | |||||| Sbjct 2839341 GCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCAT 2839400 Query 149156 AAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCC 149215 ||||||||||| | |||||| ||| | ||||| || || | || || ||| Sbjct 2839401 GAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCC 2839460 Query 149216 CATGTTGCGGCGCAGGTTGA-GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACA 149274 ||| ||||| || | | || | ||| | ||| |||||||||||||||| ||| | Sbjct 2839461 ATGGTTCTTGCGCAAGTCCATGAACTC-GAAGACGTCGGCGTGCCACGGCTCAAGGTAAA 2839519 Query 149275 CCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAA 149331 |||| ||||| ||| ||||| ||||||||||||| ||| | ||||||||| Sbjct 2839520 TAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAA 2839579 Query 149332 ACACTCGAACCATAGGTTCAATGCCAC---TGGCAGTGCCGTTAGTAGAGCTAATGCGAC 149388 | || |||| ||| || |||| ||| | | |||||||| || | ||| Sbjct 2839580 AGACACGAAGCATGGG---AATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGG 2839636 Query 149389 TGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATG 149447 ||| || || | ||| |||||| || ||||| || ||| | ||| ||||| Sbjct 2839637 AGCCAGTGGCACGAATACGGTGAGCGTTGAGACCAATGCCACCAGCCAT-CTTGGAGATC 2839695 Query 149448 GCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGC 149507 |||||| ||| || |||||| ||||| || ||| ||||||| | Sbjct 2839696 ATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACG 2839755 Query 149508 AGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCG 149567 || ||||| || ||| || | | || || || ||| | |||||| ||| Sbjct 2839756 AGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCA 2839815 Query 149568 TGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATC 149626 || || || | || |||| ||| | | ||| | ||||| ||||| || | || ||| Sbjct 2839816 TGGGTGAAGAACTTGCTGG-ACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATC 2839874 Query 149627 GCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTT 149686 || |||||| | || || ||||| | ||| ||||| |||| ||| || | ||| Sbjct 2839875 ACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 2839934 Query 149687 TCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAA 149746 ||| ||||||| ||| | || || |||||| |||| ||||| | ||||| || Sbjct 2839935 ATCAAGCTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 2839994 Query 149747 GTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 ||||||| ||| | ||||||| | |||| Sbjct 2839995 GTCGCGGTCGTAGACAATGGCAGAATCGA 2840023 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| |||||| ||||||||||| Sbjct 607065 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 607006 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| ||||||| |||||||| ||||| || ||||| |||||||| |||||| ||| Sbjct 607005 GCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTC 606946 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | | |||| || |||| || ||| || |||| |||| ||| |||||||| Sbjct 606945 ACGTTATCAATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 606893 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| || || ||| | ||||| |||||||| || Sbjct 607579 GTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTACGACCA-TCCTCAAGCTGCTTTCC 607521 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||||||||| ||||| ||||| || |||||| ||| Sbjct 607520 GGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTGGATCTTCGACTT 607461 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | || || |||| || | || ||||| || || || Sbjct 607460 GACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCTGTAAGGGT 607401 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 607400 CTTGACGAAAATCTGCAT 607383 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || |||||||||| || ||| ||| | || || |||| Sbjct 607814 ATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCA-TCTTCCAGCT 607756 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || ||||||||||| || || || || |||||||| ||||| Sbjct 607755 GCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCT 607696 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| |||||| | | ||| || || | || | || || || | Sbjct 607695 TGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTTCCAG 607636 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 607635 TCAGCGTCTTGACGAAGATCTGCAT 607611 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| ||||| || ||||| ||| || ||| | | | ||||| || Sbjct 607360 AAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCAAG 607302 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || | || | ||||||||||| || |||||||| ||||| || || Sbjct 607301 TTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAAT 607242 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | || || | | ||| || || | ||||| ||| ||||| Sbjct 607241 CTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCC 607182 Query 133634 GGTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 607181 AGTGAGCGTCTTGACGA 607165 >seq10 Length=4416304 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| ||||||||||||||| || Sbjct 3556435 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 3556494 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| || ||||| |||||||| |||||| ||| Sbjct 3556495 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 3556554 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || ||||| ||||| || Sbjct 3556555 GACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGT 3556614 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3556615 CTTGACGAAGATCTGCATG 3556633 >seq9 Length=4851470 Score = 132 bits (146), Expect = 5e-26 Identities = 337/509 (66%), Gaps = 13/509 (3%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||| || |||||||| ||||| || ||||| | | || ||||| | Sbjct 3450974 CTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 3450915 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | || || || | ||| | || || || Sbjct 3450914 CATGAAGTCGAAGGGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAG 3450855 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 ||||| || || ||||||||||||| ||| | | | ||||||||| || | || Sbjct 3450854 GCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGC 3450795 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 |||| ||| |||| ||||||| |||||| | || || || || ||| | Sbjct 3450794 GCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTC 3450735 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGC--GCGTTCGGTAGTACA---GGCAC 120645 || | | || | ||| | || ||| | | | | |||||| |||| Sbjct 3450734 CTCAAT------GACCTGCTTGTTGGGG-CGGTGCTTGAGGTGAG-AGTACAAGAGGCAG 3450683 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 |||||||| |||||||| |||||||| || || || ||||||||| || ||||| ||| Sbjct 3450682 GCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCG 3450623 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||||| ||| | |||||| | || |||| |||||| || ||||| | Sbjct 3450622 GGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATA 3450563 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825 ||||| || ||||||||| |||| |||| ||| || | | ||| | |||| Sbjct 3450562 CCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTGATC 3450503 Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCG 120854 ||||||| |||||| || ||||| ||||| Sbjct 3450502 CACTTCAGGGCCCAGTCAGCCTTCTTGCG 3450474 >seq14 Length=3529981 Score = 109 bits (120), Expect = 5e-19 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| || |||||||| |||||| Sbjct 714193 TCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 714134 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| || ||| || || | ||| | | Sbjct 714133 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATG 714074 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 || || || ||||| || || |||||| ||||| Sbjct 714073 GTCTTACCCGTCAGGGTCTTCACGAAA--CTGCA 714042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420594546160