Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6 111 4e-19 >seq6 Length=6290098 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || ||||| ||||| || |||||||| || |||||| Sbjct 607614 CAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCTGAC 607673 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || ||| || Sbjct 607674 ACGATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAGCAG 607733 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| ||||||||| |||||||||| | ||| || |||||||||| || Sbjct 607734 CGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGCGATTACAACATC 607793 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || || || || || Sbjct 607794 CAGAAGGAATCAACCCTCCATCTGGT 607819 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||| || ||||| || | || || ||| ||| ||| Sbjct 607386 CAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAATCTTCAGAC 607445 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || || ||| || ||| || Sbjct 607446 ACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCGACCAGCAG 607505 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||||||||||||| | || ||||| | || ||| | ||||||||| | Sbjct 607506 CGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCGGATTACAACATT 607565 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| || || || Sbjct 607566 CAGAAGGAGTCAACTCTGCATCTCGT 607591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820285169314