Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 141 9e-29 seq9 84.2 2e-11 >seq6 Length=6290098 Score = 141 bits (156), Expect = 9e-29 Identities = 728/1142 (64%), Gaps = 37/1142 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| || || ||||| | | || | ||| ||| | ||| Sbjct 2838499 TTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGC 2838558 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| || || || | |||| || ||||||||| || || Sbjct 2838559 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 2838618 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || |||| ||||| | | ||| | ||||||| | | ||| ||||| Sbjct 2838619 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGTGAGTCCCAATCCCAG 2838678 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | |||||| | || |||||||||||||||||||| | || | | || | Sbjct 2838679 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAG 2838738 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAG-CTTGCCTCGAGCG 147190 || || |||| | |||| | || || || |||| | |||| | || || | Sbjct 2838739 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATG--GTAAGAG 2838796 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCTC 147248 | | | ||| ||||| ||| ||| | ||||| || |||| || || ||| Sbjct 2838797 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG--GCCTCAGGAGACTC 2838854 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | ||||||| || || | || ||||| || | |||||||| ||| | || || || Sbjct 2838855 GAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAATGGG 2838914 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCG-CTC-GCTATGGGATAGTGGTTGCGATCAATA 147366 || || |||||| | | || | ||| | | ||| ||||||||| |||||| Sbjct 2838915 GCGGTGACGCATGTTGCT--GTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATG 2838972 Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA- 147425 |||||||| | ||| || || || || | ||| | | || |||| ||| || || Sbjct 2838973 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGAAGCTTCTGGAAGTCGTAG 2839032 Query 147426 AGTCC--CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483 | || ||| | | || ||| | | || || | || |||| |||||||| Sbjct 2839033 ACACCATCGTTGTAGTCA---ACGAAGGTGGGCAGAGCAAGGGAAGCCAAGTTGCAGACA 2839089 Query 147484 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543 || ||| |||| ||| ||||| | ||| || | ||| |||||| || || Sbjct 2839090 GCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCAAAGGTTGGAGCTGCGGATA 2839149 Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 ||| | || | ||| ||||| || || ||| || || ||| | |||||| | || Sbjct 2839150 GTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGG 2839209 Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660 ||| |||||| || | || | ||| | ||| | || | ||| || | Sbjct 2839210 TTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAA---AGCTTCTGGGCCTTGATG 2839266 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || ||| ||||||| |||||| ||||||||| ||| ||||| ||||| Sbjct 2839267 GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCA 2839326 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780 ||||| || || ||||| || |||| || || ||||| || | ||| | ||| | Sbjct 2839327 TAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTC 2839386 Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTG 147840 | || | ||| |||||||| || | ||| || ||| | ||| || || || | Sbjct 2839387 TCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGG 2839446 Query 147841 CAATCCTCGGCGCCCATG----TTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGT 147895 ||||| | ||||| ||||| ||| | | | || | | ||| |||||||| Sbjct 2839447 ACCTCCTCCTTG-CCATGGTTCTTGCG---CAAGTCCATGAACTCGA-AGACGTCGGCGT 2839501 Query 147896 GCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACAT 147952 |||| || |||| ||| | || | || || |||| || || ||||||||||| | Sbjct 2839502 GCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGT 2839561 Query 147953 GGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGG 148012 ||| | |||||||||| || || | |||||| | ||| ||| |||||||||| Sbjct 2839562 AGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGG 2839621 Query 148013 TG 148014 || Sbjct 2839622 TG 2839623 >seq9 Length=4851470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 46768 TTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATC-GAGAGCGAGACCGCCACGCTGGCC 46826 ||||||| ||||| | |||||| ||||||||||| | || |||| | || | | ||| Sbjct 3450472 TTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGA-TGAGAACTCCTCCTTCGCC 3450530 Query 46827 GAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCC 46886 |||| |||| || || || || || || | || || || ||||||| || Sbjct 3450531 CAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCC 3450590 Query 46887 ATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATC 46946 || |||| | || | ||| | ||||| || ||||| ||| |||||| | ||| Sbjct 3450591 ATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATC 3450650 Query 46947 TCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCT 46986 || || ||||| || || ||||| |||||||| || |||| Sbjct 3450651 TCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCT 3450690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610997440240