Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq6 141 9e-29
seq9 84.2 2e-11
>seq6
Length=6290098
Score = 141 bits (156), Expect = 9e-29
Identities = 728/1142 (64%), Gaps = 37/1142 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || |||||||| || || ||||| | | || | ||| ||| | |||
Sbjct 2838499 TTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGC 2838558
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || |||| || ||||| || || || | |||| || ||||||||| || ||
Sbjct 2838559 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 2838618
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| ||| || |||| ||||| | | ||| | ||||||| | | ||| |||||
Sbjct 2838619 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGTGAGTCCCAATCCCAG 2838678
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132
| |||||| | || |||||||||||||||||||| | || | | || |
Sbjct 2838679 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAG 2838738
Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAG-CTTGCCTCGAGCG 147190
|| || |||| | |||| | || || || |||| | |||| | || || |
Sbjct 2838739 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATG--GTAAGAG 2838796
Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCTC 147248
| | | ||| ||||| ||| ||| | ||||| || |||| || || |||
Sbjct 2838797 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG--GCCTCAGGAGACTC 2838854
Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308
| ||||||| || || | || ||||| || | |||||||| ||| | || || ||
Sbjct 2838855 GAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAATGGG 2838914
Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCG-CTC-GCTATGGGATAGTGGTTGCGATCAATA 147366
|| || |||||| | | || | ||| | | ||| ||||||||| ||||||
Sbjct 2838915 GCGGTGACGCATGTTGCT--GTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATG 2838972
Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA- 147425
|||||||| | ||| || || || || | ||| | | || |||| ||| || ||
Sbjct 2838973 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGAAGCTTCTGGAAGTCGTAG 2839032
Query 147426 AGTCC--CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483
| || ||| | | || ||| | | || || | || |||| ||||||||
Sbjct 2839033 ACACCATCGTTGTAGTCA---ACGAAGGTGGGCAGAGCAAGGGAAGCCAAGTTGCAGACA 2839089
Query 147484 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543
|| ||| |||| ||| ||||| | ||| || | ||| |||||| || ||
Sbjct 2839090 GCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCAAAGGTTGGAGCTGCGGATA 2839149
Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603
||| | || | ||| ||||| || || ||| || || ||| | |||||| | ||
Sbjct 2839150 GTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGG 2839209
Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660
||| |||||| || | || | ||| | ||| | || | ||| || |
Sbjct 2839210 TTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAA---AGCTTCTGGGCCTTGATG 2839266
Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720
|| ||| ||||||| |||||| ||||||||| ||| ||||| |||||
Sbjct 2839267 GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCA 2839326
Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780
||||| || || ||||| || |||| || || ||||| || | ||| | ||| |
Sbjct 2839327 TAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTC 2839386
Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTG 147840
| || | ||| |||||||| || | ||| || ||| | ||| || || || |
Sbjct 2839387 TCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGG 2839446
Query 147841 CAATCCTCGGCGCCCATG----TTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGT 147895
||||| | ||||| ||||| ||| | | | || | | ||| ||||||||
Sbjct 2839447 ACCTCCTCCTTG-CCATGGTTCTTGCG---CAAGTCCATGAACTCGA-AGACGTCGGCGT 2839501
Query 147896 GCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACAT 147952
|||| || |||| ||| | || | || || |||| || || ||||||||||| |
Sbjct 2839502 GCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGT 2839561
Query 147953 GGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGG 148012
||| | |||||||||| || || | |||||| | ||| ||| ||||||||||
Sbjct 2839562 AGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGG 2839621
Query 148013 TG 148014
||
Sbjct 2839622 TG 2839623
>seq9
Length=4851470
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 46768 TTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATC-GAGAGCGAGACCGCCACGCTGGCC 46826
||||||| ||||| | |||||| ||||||||||| | || |||| | || | | |||
Sbjct 3450472 TTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGA-TGAGAACTCCTCCTTCGCC 3450530
Query 46827 GAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCC 46886
|||| |||| || || || || || || | || || || ||||||| ||
Sbjct 3450531 CAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCC 3450590
Query 46887 ATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATC 46946
|| |||| | || | ||| | ||||| || ||||| ||| |||||| | |||
Sbjct 3450591 ATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATC 3450650
Query 46947 TCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCT 46986
|| || ||||| || || ||||| |||||||| || ||||
Sbjct 3450651 TCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCT 3450690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476610997440240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |