Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq15 156 5e-33 >seq15 Length=3115873 Score = 156 bits (172), Expect = 5e-33 Identities = 350/533 (66%), Gaps = 47/533 (9%) Strand=Plus/Plus Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965 ||||||| | || || | |||||||||| ||||||||||||||| |||| | || Sbjct 414075 CCAGCTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGT 414134 Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGT 147025 || | | ||||| | || | | | || | ||||| ||||| |||| || Sbjct 414135 GCGTGAGGCTTCCCGGTACCAAATCGCACGCCCGCGCAATCATGTGCGTGAGGAGCGCGT 414194 Query 147026 AGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGC 147085 ||||||| ||||||||||| ||||| || |||||||| | |||| |||||||| ||||| Sbjct 414195 AGCTGGCAATGTTGAAGGGCACCCCGAGTCCCATGTCGCAAGACCGCTGGTACAACTGGC 414254 Query 147086 ACGAGAG---------------CTCCCCGT-------------------------CGGCC 147105 | ||| |||| ||| ||| Sbjct 414255 AGTGGAGGTGGCCCTTTGGCTTCTCCTCGTTTGCGGGCGTGGCACCGCGGGCTCGCGGGT 414314 Query 147106 ACG-----TAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 ||| |||||||| ||| | |||||||||||||| |||||||| ||| ||| Sbjct 414315 ACGAGACATAAAACTGCGCAAAC-ATGTGGCACGGCGGGAGCGCCATCTTCTTCAGATCC 414373 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCG 147219 || |||||||| || || | | || | | | |||||| |||| | || | | Sbjct 414374 GCTGGGTTCCATGCGCTGAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGG 414433 Query 147220 ATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTAC 147279 || ||| ||| ||||| |||||||||||| ||| | ||| | |||| |||||| Sbjct 414434 ATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTAC 414493 Query 147280 CTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTG 147339 ||| |||||||| | ||| |||||||||||||| || || ||||||||| | | | Sbjct 414494 TCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGACTTCGCGG 414553 Query 147340 TGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 || |||| ||| | | | ||| |||||| | || |||| | |||||||||| Sbjct 414554 TGGGAGAGGCCGACGCTGTCGAGGAACTCGCGCGATCCGTTGCCGTCCCAGAT 414606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487752017600