Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 159 5e-33 seq9 145 1e-28 seq8 125 1e-22 >seq6 Length=6290098 Score = 159 bits (176), Expect = 5e-33 Identities = 229/319 (72%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 259868 GAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCC 259926 |||| ||| ||| |||||| | |||||| ||||| ||| |||||| || | || Sbjct 2839865 GAGCGCGTCATCGAGACCTACAACCTCATGTC-CAGCAAGTTCTTCACCCATGCCTCCCC 2839807 Query 259927 CACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTTCTGTTGGA 259983 ||| ||||| || || || || || | ||| || | || || ||||| || | || Sbjct 2839806 CACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTG---TCTTCATGCTTCCTCGTCGA 2839750 Query 259984 CATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTC 260043 |||||||| || || || ||||| ||||| ||||| |||||| ||||| | ||||| Sbjct 2839749 CATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTC 2839690 Query 260044 CAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGT 260103 |||| ||| || ||||| ||| | ||| ||| | || ||| | ||| |||| | Sbjct 2839689 CAAGATGGCTGGTGGCATTGGTCTCAACGCTCACCGTATTCGTGCCACTGGCTCCTATAT 2839630 Query 260104 GGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACAC 260163 || |||||||||||| || ||||| | | ||||||||||| || |||||| |||| Sbjct 2839629 TGCCGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACAC 2839570 Query 260164 GGCGCGCTACGTCGACCAG 260182 || ||||||||||||||| Sbjct 2839569 TGCTCGCTACGTCGACCAG 2839551 Score = 107 bits (118), Expect = 3e-17 Identities = 355/544 (65%), Gaps = 20/544 (4%) Strand=Plus/Minus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGAC-AGCATGGCCTGCGCAACTCGT 262933 || |||||| |||||| ||||| || | | | || | |||| || |||||||| | Sbjct 2838681 CCTCTGGGATTGGGACTCACTGAAGGAG-CAGATCAAGGAGCACGGTGTGCGCAACAGTT 2838623 Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||||| || | |||||| || ||| | || ||||||||| ||||||||| |||| | Sbjct 2838622 TGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCT 2838563 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 ||||| | ||| |||||||||| || || || || | ||||| || || | Sbjct 2838562 TCGAGCCCTACACCTCCAACATCTACCAACGTCGTGTTCTTGCCGGCGAGTTCCAGGTTG 2838503 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCG 263113 |||||| | || | ||| | || | ||||||||| | | | | Sbjct 2838502 TCAACCCCTGGTTGTTGAAGGATCTCGTCGACATGGGCCTGTGGTCCGATGCCATGAAGA 2838443 Query 263114 ACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCG 263173 |||| |||| || | | || || | ||| | | | || | |||| | Sbjct 2838442 ACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAACAT-----TCCCGCT-G 2838389 Query 263174 ATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGAT---A 263230 | |||||||||| | ||||||||| |||||| | || | || ||| ||| | | Sbjct 2838388 AGGTCAAGGCTCTGTACAAGACCGTTTGGGAGATCTCCCAGCGC---ACCGTTGTTCAGA 2838332 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 |||| |||||||| | ||| |||||||| |||||| || ||| | || | | Sbjct 2838331 TGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCACATGAAGG 2838272 Query 263291 ACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347 ||||||| || | ||| || || || |||||| | | ||| | || |||| Sbjct 2838271 ACCCGACAATGGGCAAGATCACCA-GT--ATGCACTTCGCCGGCTGGAAGCTTGGTCTCA 2838215 Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407 |||| ||||||||||| ||||| || | | | ||| | | | ||||| |||||||||| Sbjct 2838214 AGACGGGCATGTACTACCTGCGTACGCAGGCAGCTTCTGCCCCTATTCAGTTCACCGTCG 2838155 Query 263408 ATCA 263411 | || Sbjct 2838154 ACCA 2838151 >seq9 Length=4851470 Score = 145 bits (160), Expect = 1e-28 Identities = 240/340 (71%), Gaps = 15/340 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||||||||||||| | || | Sbjct 3450075 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATC 3450133 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| | | | ||| || ||| | ||| Sbjct 3450134 TCTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGATGATGAGAAGTACTTC 3450189 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | || ||||| || |||||| || || ||||| |||||||||| Sbjct 3450190 ATCTCTCACATTCTTGCCTTCTT-CGCCGCATCGGACGGTATCGTCAATGAGAACCTGGT 3450248 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| |||||||| | || ||||| || | || ||||| |||||||| Sbjct 3450249 CGAGCGCTTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGAT 3450308 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || |||||||||||||| |||||||| ||||| |||||||||||| ||||||| Sbjct 3450309 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 3450368 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106 || | || | ||| ||||||| |||||| ||||| Sbjct 3450369 GCCCG-CGCAGCGCACCTACCTCTTCAACGCCATTGACAC 3450407 Score = 114 bits (126), Expect = 2e-19 Identities = 120/154 (78%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 1456123 aaaaaGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 || ||||| |||||||| |||||||||||| | | ||| | || | ||| ||| ||| Sbjct 3450477 AAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAAC-TCCTC-CTTCGCCCAGC 3450534 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | ||||||||| || ||||| ||||| ||| || ||| | |||||| Sbjct 3450535 GTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCT 3450594 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||||| ||||||||||||||||| Sbjct 3450595 TTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCT 3450628 Score = 100 bits (110), Expect = 4e-15 Identities = 156/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||||| || |||||| |||| ||| | ||||| ||| ||| | ||||| || Sbjct 3450738 ATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCT 3450797 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| ||| | | ||| |||||||||| | || || |||||||||| Sbjct 3450798 CTTCTCGGCATGAACTCCAAC-TTGATGAAGCAGTACATTG-AGTTCGTTGCCGACCGCC 3450855 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| | || ||| |||| | | ||||||| ||| | ||| Sbjct 3450856 TCCTGGTCGCTCTTGGCAAC-GACAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATG 3450914 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| ||||| || | |||||||||||||| || ||| Sbjct 3450915 GAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAG 3450953 >seq8 Length=5005225 Score = 125 bits (138), Expect = 1e-22 Identities = 176/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| || || || | |||| |||||||| || || |||||| | ||||||| | Sbjct 2433162 CGTCGGTAAGTCGGGCGTAGCGGAGGATGGCGCATCGCGACTGCAGCGGTTCGATGATCT 2433103 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | ||| ||||||||| | ||| || |||||||| |||| | ||||||| ||| Sbjct 2433102 TGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATTTCCATTGTCC 2433043 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 |||||||||||||| || | | || | || |||||||||||||||||||| || || Sbjct 2433042 GGCGGAGGGCCTGTTGAGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATGACGAGCT 2432983 Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCA 333095 ||||||| || || ||||| ||| | ||| ||| | |||||| || || | Sbjct 2432982 TGTGGCGACCCTGGGGCAGGGTGACCTTCTTCTGCGCGAAGCCCTTGATGCGGTTACGAA 2432923 Query 333096 CGACGTC 333102 ||||||| Sbjct 2432922 CGACGTC 2432916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807920637508