Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq6 159 5e-33
seq9 145 1e-28
seq8 125 1e-22
>seq6
Length=6290098
Score = 159 bits (176), Expect = 5e-33
Identities = 229/319 (72%), Gaps = 8/319 (3%)
Strand=Plus/Minus
Query 259868 GAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCC 259926
|||| ||| ||| |||||| | |||||| ||||| ||| |||||| || | ||
Sbjct 2839865 GAGCGCGTCATCGAGACCTACAACCTCATGTC-CAGCAAGTTCTTCACCCATGCCTCCCC 2839807
Query 259927 CACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTTCTGTTGGA 259983
||| ||||| || || || || || | ||| || | || || ||||| || | ||
Sbjct 2839806 CACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTG---TCTTCATGCTTCCTCGTCGA 2839750
Query 259984 CATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTC 260043
|||||||| || || || ||||| ||||| ||||| |||||| ||||| | |||||
Sbjct 2839749 CATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTC 2839690
Query 260044 CAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGT 260103
|||| ||| || ||||| ||| | ||| ||| | || ||| | ||| |||| |
Sbjct 2839689 CAAGATGGCTGGTGGCATTGGTCTCAACGCTCACCGTATTCGTGCCACTGGCTCCTATAT 2839630
Query 260104 GGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACAC 260163
|| |||||||||||| || ||||| | | ||||||||||| || |||||| ||||
Sbjct 2839629 TGCCGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACAC 2839570
Query 260164 GGCGCGCTACGTCGACCAG 260182
|| |||||||||||||||
Sbjct 2839569 TGCTCGCTACGTCGACCAG 2839551
Score = 107 bits (118), Expect = 3e-17
Identities = 355/544 (65%), Gaps = 20/544 (4%)
Strand=Plus/Minus
Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGAC-AGCATGGCCTGCGCAACTCGT 262933
|| |||||| |||||| ||||| || | | | || | |||| || |||||||| |
Sbjct 2838681 CCTCTGGGATTGGGACTCACTGAAGGAG-CAGATCAAGGAGCACGGTGTGCGCAACAGTT 2838623
Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993
||||||| || | |||||| || ||| | || ||||||||| ||||||||| |||| |
Sbjct 2838622 TGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCT 2838563
Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053
||||| | ||| |||||||||| || || || || | ||||| || || |
Sbjct 2838562 TCGAGCCCTACACCTCCAACATCTACCAACGTCGTGTTCTTGCCGGCGAGTTCCAGGTTG 2838503
Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCG 263113
|||||| | || | ||| | || | ||||||||| | | | |
Sbjct 2838502 TCAACCCCTGGTTGTTGAAGGATCTCGTCGACATGGGCCTGTGGTCCGATGCCATGAAGA 2838443
Query 263114 ACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCG 263173
|||| |||| || | | || || | ||| | | | || | |||| |
Sbjct 2838442 ACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAACAT-----TCCCGCT-G 2838389
Query 263174 ATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGAT---A 263230
| |||||||||| | ||||||||| |||||| | || | || ||| ||| | |
Sbjct 2838388 AGGTCAAGGCTCTGTACAAGACCGTTTGGGAGATCTCCCAGCGC---ACCGTTGTTCAGA 2838332
Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290
|||| |||||||| | ||| |||||||| |||||| || ||| | || | |
Sbjct 2838331 TGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCACATGAAGG 2838272
Query 263291 ACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347
||||||| || | ||| || || || |||||| | | ||| | || ||||
Sbjct 2838271 ACCCGACAATGGGCAAGATCACCA-GT--ATGCACTTCGCCGGCTGGAAGCTTGGTCTCA 2838215
Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407
|||| ||||||||||| ||||| || | | | ||| | | | ||||| ||||||||||
Sbjct 2838214 AGACGGGCATGTACTACCTGCGTACGCAGGCAGCTTCTGCCCCTATTCAGTTCACCGTCG 2838155
Query 263408 ATCA 263411
| ||
Sbjct 2838154 ACCA 2838151
>seq9
Length=4851470
Score = 145 bits (160), Expect = 1e-28
Identities = 240/340 (71%), Gaps = 15/340 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||||||||| ||||| ||||||||||||||| | || |
Sbjct 3450075 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATC 3450133
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887
|| | || |||| ||||| | | | ||| || ||| | |||
Sbjct 3450134 TCTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGATGATGAGAAGTACTTC 3450189
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| | || ||||| || |||||| || || ||||| ||||||||||
Sbjct 3450190 ATCTCTCACATTCTTGCCTTCTT-CGCCGCATCGGACGGTATCGTCAATGAGAACCTGGT 3450248
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| ||||| |||||||| | || ||||| || | || ||||| ||||||||
Sbjct 3450249 CGAGCGCTTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGAT 3450308
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || |||||||||||||| |||||||| ||||| |||||||||||| |||||||
Sbjct 3450309 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 3450368
Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106
|| | || | ||| ||||||| |||||| |||||
Sbjct 3450369 GCCCG-CGCAGCGCACCTACCTCTTCAACGCCATTGACAC 3450407
Score = 114 bits (126), Expect = 2e-19
Identities = 120/154 (78%), Gaps = 3/154 (2%)
Strand=Plus/Plus
Query 1456123 aaaaaGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182
|| ||||| |||||||| |||||||||||| | | ||| | || | ||| ||| |||
Sbjct 3450477 AAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAAC-TCCTC-CTTCGCCCAGC 3450534
Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241
| || || | ||||||||| || ||||| ||||| ||| || ||| | ||||||
Sbjct 3450535 GTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCT 3450594
Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||||||||||||| |||||||||||||||||
Sbjct 3450595 TTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCT 3450628
Score = 100 bits (110), Expect = 4e-15
Identities = 156/219 (71%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||||| || |||||| |||| ||| | ||||| ||| ||| | ||||| ||
Sbjct 3450738 ATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCT 3450797
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| ||||||||||| ||| | | ||| |||||||||| | || || ||||||||||
Sbjct 3450798 CTTCTCGGCATGAACTCCAAC-TTGATGAAGCAGTACATTG-AGTTCGTTGCCGACCGCC 3450855
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| || | || || ||| | || ||| |||| | | ||||||| ||| | |||
Sbjct 3450856 TCCTGGTCGCTCTTGGCAAC-GACAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATG 3450914
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
||| ||||| || | |||||||||||||| || |||
Sbjct 3450915 GAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAG 3450953
>seq8
Length=5005225
Score = 125 bits (138), Expect = 1e-22
Identities = 176/247 (71%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915
|||| || || || | |||| |||||||| || || |||||| | ||||||| |
Sbjct 2433162 CGTCGGTAAGTCGGGCGTAGCGGAGGATGGCGCATCGCGACTGCAGCGGTTCGATGATCT 2433103
Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975
| ||| ||||||||| | ||| || |||||||| |||| | ||||||| |||
Sbjct 2433102 TGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATTTCCATTGTCC 2433043
Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035
|||||||||||||| || | | || | || |||||||||||||||||||| || ||
Sbjct 2433042 GGCGGAGGGCCTGTTGAGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATGACGAGCT 2432983
Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCA 333095
||||||| || || ||||| ||| | ||| ||| | |||||| || || |
Sbjct 2432982 TGTGGCGACCCTGGGGCAGGGTGACCTTCTTCTGCGCGAAGCCCTTGATGCGGTTACGAA 2432923
Query 333096 CGACGTC 333102
|||||||
Sbjct 2432922 CGACGTC 2432916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177807920637508
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |