Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq10 122 8e-23
seq6 116 3e-21
seq14 96.9 3e-15
>seq10
Length=4416304
Score = 122 bits (134), Expect = 8e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || |||| || |||||||| || || ||
Sbjct 3556441 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 3556500
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | |||| || |||||||||| |||||| ||| | | |
Sbjct 3556501 GATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 3556560
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| ||| |||||||| | ||||| || || ||||||| || || ||
Sbjct 3556561 GTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGAC 3556620
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 3556621 GAAGATCTGCAT 3556632
>seq6
Length=6290098
Score = 116 bits (128), Expect = 3e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| |||||||||||||| | |||||| || | || || |||||||| || || ||
Sbjct 607574 CTCCTTCTGAATGTTGTAATCCGACAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAA 607515
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | ||||| || |||||| || |||||| ||| | ||
Sbjct 607514 GATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTGGATCTTCGACTTGA-CGT 607456
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| ||||| ||||| | ||| ||||| || || || | || || |
Sbjct 607455 TGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGA 607396
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 607395 CGAAAATCTGCAT 607383
Score = 102 bits (112), Expect = 7e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||||||| || || || | || ||||||||||| || || ||
Sbjct 607801 TCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAG 607742
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | ||||||||||| | |||| | |||||||||| |||||| ||||| | |
Sbjct 607741 ATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACATTA 607682
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | |||||| || || || |||| || ||||| || || |||| || || ||
Sbjct 607681 TCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACG 607622
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 607621 AAGATCTGCAT 607611
Score = 86.0 bits (94), Expect = 6e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
|||||||| | || |||||| ||||||||||| |||| || ||| || | || ||
Sbjct 607363 ACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 607304
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|| ||||| || ||||| ||||| ||||||||||| | || | || |||||| |||
Sbjct 607303 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGA 607244
Query 35648 ATCTT 35652
|||||
Sbjct 607243 ATCTT 607239
>seq14
Length=3529981
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | ||| || | || || |||||||| || || || |
Sbjct 714228 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 714169
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||| | || | || |||||||||| |||||| ||| | | |
Sbjct 714168 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 714109
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||||| || || ||||| | || || || |||||||||| || ||||| |
Sbjct 714108 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 714049
Query 35727 A 35727
|
Sbjct 714048 A 714048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793408412720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |