Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq10 122 8e-23 seq6 116 3e-21 seq14 96.9 3e-15 >seq10 Length=4416304 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || |||||||| || || || Sbjct 3556441 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 3556500 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | |||| || |||||||||| |||||| ||| | | | Sbjct 3556501 GATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 3556560 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| |||||||| | ||||| || || ||||||| || || || Sbjct 3556561 GTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGAC 3556620 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3556621 GAAGATCTGCAT 3556632 >seq6 Length=6290098 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| | |||||| || | || || |||||||| || || || Sbjct 607574 CTCCTTCTGAATGTTGTAATCCGACAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAA 607515 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || |||||| || |||||| ||| | || Sbjct 607514 GATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTGGATCTTCGACTTGA-CGT 607456 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||||| ||||| | ||| ||||| || || || | || || | Sbjct 607455 TGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGA 607396 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 607395 CGAAAATCTGCAT 607383 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||||||| || || || | || ||||||||||| || || || Sbjct 607801 TCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAG 607742 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | |||| | |||||||||| |||||| ||||| | | Sbjct 607741 ATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACATTA 607682 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || || |||| || ||||| || || |||| || || || Sbjct 607681 TCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACG 607622 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 607621 AAGATCTGCAT 607611 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || |||||| ||||||||||| |||| || ||| || | || || Sbjct 607363 ACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 607304 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || ||||| ||||| ||||||||||| | || | || |||||| ||| Sbjct 607303 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGA 607244 Query 35648 ATCTT 35652 ||||| Sbjct 607243 ATCTT 607239 >seq14 Length=3529981 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || | || || |||||||| || || || | Sbjct 714228 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 714169 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 714168 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 714109 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||||| || || ||||| | || || || |||||||||| || ||||| | Sbjct 714108 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 714049 Query 35727 A 35727 | Sbjct 714048 A 714048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793408412720