Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq10 123 3e-23
seq6 122 9e-23
seq14 95.1 1e-14
>seq10
Length=4416304
Score = 123 bits (136), Expect = 3e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || ||||| || ||||| ||||| || |||||||||||| | |||| |
Sbjct 3556415 AGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 3556474
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| || || || || |||| |||||||| ||||| || ||||| ||
Sbjct 3556475 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCC 3556534
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | ||||||||||| ||||| || || ||
Sbjct 3556535 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 3556594
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || | || || ||||| || |||||
Sbjct 3556595 ATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632
>seq6
Length=6290098
Score = 122 bits (134), Expect = 9e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554
|| |||| ||||| || || || || ||||| ||||||||||| | || ||| ||| |
Sbjct 607600 AGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAA-GGTACG 607542
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
| || || ||||| || || || || ||||| |||||||| ||||| || ||||| ||
Sbjct 607541 ACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTC 607482
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| ||||| || || ||||| ||| | ||||| || ||||| || ||||| ||
Sbjct 607481 CTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGT 607422
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||| || || || || | || || |||||||| |||||
Sbjct 607421 AATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || || || ||||| || |||||||||||| | |||| | ||| || |||||
Sbjct 607072 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTG 607013
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| || ||||| | ||||||||||||||| || ||||| || || || || || ||
Sbjct 607012 CTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 606953
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|| || || | || ||||| || || || |||||||| ||||| || |||||
Sbjct 606952 GGACTTCACGTTATCAATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 606893
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || ||||| ||||| ||||||||||||||| | |||| | || || || ||
Sbjct 607357 TGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGTTGC 607298
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
||||| ||||| |||||||||||||| || || || ||||| || || || ||||| ||
Sbjct 607297 TTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTC 607238
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||||| ||| | || || || || || || || || || ||||| || || ||
Sbjct 607237 GACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTG 607178
Query 134691 AAAGTTTTAACGA 134703
| || || ||||
Sbjct 607177 AGCGTCTTGACGA 607165
>seq14
Length=3529981
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || |||||||||||| | |||| | || || ||||| ||||| || || |
Sbjct 714228 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 714169
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
||| |||||||| || || || ||||| || || || || || || ||||| ||
Sbjct 714168 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 714109
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | |||||||| || || || || || |||||||| ||||| || | || || ||||
Sbjct 714108 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 714049
Query 134704 AA 134705
||
Sbjct 714048 AA 714047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398185205680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |