Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 102 6e-17 >seq6 Length=6290098 Score = 102 bits (112), Expect = 6e-17 Identities = 274/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||| | || |||||||| || | || || | ||| |||||||| ||||| || Sbjct 5844385 CCCAAGATTATCAACGGTCCTGAGGTCCTCAACAAGTTTGTTGGTCAATCCGAAGAGAAC 5844326 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| ||||||| || ||||| |||| | | || | |||||| | | ||| Sbjct 5844325 ATTCGAAAGATGTTTGCGGATGCTGA-GAAGGAGTACAAGGAGAAGGGCGACCAGAGTGG 5844267 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT-- 19605 | | |||||||| || | ||||| ||||| || |||| ||||||||||| || ||| Sbjct 5844266 TCTTCACATTATCATTTTCGATGAGTTGGATGCCGTCTGCAAGCAAAGAGGCTCCGGTGC 5844207 Query 19606 -------GTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 | | ||| || ||||| ||| || || || || || | || | ||||| Sbjct 5844206 CGGCGGCGGCACTGGTGTTGGTGACAGTGTCGTTAACCAGCTTCTCACCAAGCTCGACGG 5844147 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 |||| |||| || || || || | | || || ||||| || | || | || || Sbjct 5844146 TGTTGACCAGCTTAACAACATCCTGCTCATCGGTATGACCAACCGTAAAGATATGATCGA 5844087 Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || | | || |||||||| ||||| | || | || |||| ||| ||| | || Sbjct 5844086 TGAGGCGCTTCTGCGTCCCGGTCGTTTGGAGGTTCAGTTGGAGATTAGCTTGCCCAACGA 5844027 Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTT 19836 | ||||| |||||| || | || || || | | |||||| | || ||| || Sbjct 5844026 AGAGGGACGCAAGGAAATCTTCATGATCCACACTGCCAAGATGCGAGACAACAACATT 5843969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455835304170