Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq6 170 2e-37
seq9 127 3e-24
seq8 114 2e-20
>seq6
Length=6290098
Score = 170 bits (188), Expect = 2e-37
Identities = 1135/1810 (63%), Gaps = 63/1810 (3%)
Strand=Plus/Plus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| ||||||||||| ||||||||||| || |||||||| | | ||||| ||
Sbjct 2838193 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTG 2838252
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956
| |||| | || || | |||| || ||| | ||||| || |||||||||
Sbjct 2838253 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAG 2838312
Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013
|| || || || ||||| | || || | | || | || ||||| || |||
Sbjct 2838313 GCACCACGGTCGGCAGCCATCTGAA---CAACGGTGCGCTGGGAGATCTCCCAAACGGTC 2838369
Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073
|||| || ||| | ||| | || || | ||| || ||||| || ||| |
Sbjct 2838370 TTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA---ACCGTTC 2838426
Query 118074 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130
| | | |||| | | |||||| | | ||||| || || || | |||||||| |
Sbjct 2838427 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 2838486
Query 118131 A----CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 118186
| | || | |||||||| ||||| || || || || | | |||||
Sbjct 2838487 AACAACCAGGGG----TTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGAT 2838542
Query 118187 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 118246
|||| ||||| ||||| |||||||| ||||| |||||||| || | |||||||| ||
Sbjct 2838543 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 2838602
Query 118247 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 118306
|||||||| || | ||| | ||||| || | ||| | ||| | || | ||||| ||
Sbjct 2838603 AGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 2838662
Query 118307 AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 118366
| |||||| || || | | || | | |||||| || |||||||||||||
Sbjct 2838663 TGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACC 2838722
Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 118426
||||| || || ||||| | || || | |||||| ||| |||| | ||
Sbjct 2838723 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCT--GA 2838780
Query 118427 GCTCGCCTCG--AGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG 118484
| | | | || || ||||| || || || || || || || | | |
Sbjct 2838781 ACAGACATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG 2838840
Query 118485 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544
||||| || || || | | || | || |||| || ||||| ||||||
Sbjct 2838841 GCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACA 2838900
Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAA 118601
|| || ||||| ||||| || | ||| || || ||||| ||| ||||| ||
Sbjct 2838901 CCAAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGGTAG 2838957
Query 118602 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 118661
|| ||| || | | | || | || || |||| || | || ||||||
Sbjct 2838958 TGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGAAGC 2839017
Query 118662 TTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 118717
|| | | | || | | | || | | ||| || | | || || || | ||
Sbjct 2839018 TTCTGGAAGTCGTAGACACCATCGT-TGTAGTCAACGA---AGGTGGGCAGAGCAAGGGA 2839073
Query 118718 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAA 118777
|||| || || |||| | |||||| | |||||| || || || ||||| |
Sbjct 2839074 AGCCAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCAAAG 2839133
Query 118778 GTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 118837
||| || || || || || | |||||| || || ||| ||| ||||||||
Sbjct 2839134 GTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTT 2839193
Query 118838 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CAT 118896
|||||||||| | || | || ||||| || || | || ||| || || | ||| | | |
Sbjct 2839194 GTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTT 2839253
Query 118897 CGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTAGAGGG 118953
| | || | ||| ||| | | ||||| ||||||||| ||| | ||
Sbjct 2839254 CTGGGCCTTGA----TGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGG 2839309
Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013
| || ||||| || || | || | || || || || || ||||| | ||| |
Sbjct 2839310 CCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGG 2839369
Query 119014 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 119073
||| | | || ||| || | ||||||||| || || ||||||||||| || ||
Sbjct 2839370 TCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGA 2839429
Query 119074 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 119133
| || || || || | || || | || || || ||||| |||| || || |
Sbjct 2839430 AAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGA 2839489
Query 119134 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------C 119187
|| || ||||||||||| || ||||| | |||| | || | |||| |
Sbjct 2839490 AGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCC---AGGACGCTTGTTGC 2839546
Query 119188 CAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCAT 119247
|| |||||| || || | |||||| |||||| ||||||||||| ||||||| ||| |
Sbjct 2839547 CACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGT 2839606
Query 119248 CGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCA 119307
|| ||| || || || |||| || | |||| | | | ||| || |
Sbjct 2839607 TCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGA 2839666
Query 119308 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 119367
|||||| || || ||| ||| ||||| ||||| | |||| || ||||||| |
Sbjct 2839667 GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATAC 2839726
Query 119368 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGT 119426
| || || ||||| |||| | ||| ||||||||| |||| || | ||| ||
Sbjct 2839727 CCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGG 2839785
Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGT 119484
||||||||||||||||| || || | || ||| ||| | | |||| |||||| ||
Sbjct 2839786 GTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACATGAGGT 2839843
Query 119485 CGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 119543
||||||||| | |||| || | | || || || || |||| | || |||||
Sbjct 2839844 TGTAGGTCTCGATGACGCGCTCG-ACGTTATCACCCCAGATGCCGACTGCAACACGCATG 2839902
Query 119544 AACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCC 119603
| ||||| |||||| | || | | ||||| ||| | | ||||| |||||
Sbjct 2839903 ATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATCTCTCC 2839962
Query 119604 AAGGTCTTGA 119613
| ||||||||
Sbjct 2839963 AGGGTCTTGA 2839972
>seq9
Length=4851470
Score = 127 bits (140), Expect = 3e-24
Identities = 304/454 (67%), Gaps = 8/454 (2%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| | || |||||||| |||||||| ||||| ||| | | | ||| ||||||||
Sbjct 3450970 TAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 3450911
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| || || ||||| || || | | || | | |||| ||||| ||
Sbjct 3450910 AAGTCGAAGGGGTTGGAGGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAGGAGGCG 3450852
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | ||| |||||||||||| |||| | ||||||||| |||| || ||
Sbjct 3450851 GTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCA 3450792
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || || |||| ||| |||||| | || || || | |||| | |
Sbjct 3450791 GGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCCTC 3450732
Query 129967 AATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|||| || | || || | | || | || | ||||| || |||||| ||
Sbjct 3450731 AATGACCTGCTTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAGTC 3450675
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| ||||||||||||||||||||||| || || |||||| |||||| ||||||||
Sbjct 3450674 GGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 3450615
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||| | ||| || || | ||| | || ||||||||| ||||| ||
Sbjct 3450614 GCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAAC 3450555
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177
| || || |||| ||||||| || ||||||
Sbjct 3450554 AGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 3450521
>seq8
Length=5005225
Score = 114 bits (126), Expect = 2e-20
Identities = 275/409 (67%), Gaps = 13/409 (3%)
Strand=Plus/Minus
Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125
|| || || || || || | || || | ||||||||| || | ||| || | |||
Sbjct 2270179 TCGAAACGGCCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 2270120
Query 14126 ATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 14183
| |||||| | ||| | || | | | || || |||||||| ||||||| || || |
Sbjct 2270119 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 2270062
Query 14184 TGGTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 14239
||| |||||| || || || || ||| | |||| | ||| ||| | |||
Sbjct 2270061 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 2270003
Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAG 14299
| |||||| || ||||||||||| | ||| || || | | | ||||||| ||||
Sbjct 2270002 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTACGGGCATTCGCAAAC 2269943
Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGG 14357
| ||||||||||| | ||||||||| ||||||||||| ||||| | || | || |
Sbjct 2269942 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 2269883
Query 14358 AACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417
| | || |||||| || ||| || || ||| |||| ||| || | ||||| |
Sbjct 2269882 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAACGTCTTAC 2269825
Query 14418 CCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466
| || ||||| || || || | ||| ||||| |||||| | || ||
Sbjct 2269824 CGGTTCCTGGAGGTCCGGCAAGGATGGCGCCACGAGGGATCTTTGCGCC 2269776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434937165040
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