Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq6 214 2e-50
seq9 127 2e-24
>seq6
Length=6290098
Score = 214 bits (236), Expect = 2e-50
Identities = 898/1399 (64%), Gaps = 43/1399 (3%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || |||| || || || || | || |||
Sbjct 2839916 CCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTC 2839857
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || |||||| |||| | | ||| || || | || || ||||
Sbjct 2839856 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCATGCCTCCCCCACACTCT 2839799
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| |||||||| || ||| |||| |||||||| ||| || ||||| |
Sbjct 2839798 TCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAG 2839739
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|||| || | |||||||| | || || | | || || ||||| ||| |||||
Sbjct 2839738 ACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 2839679
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| || ||||| | || || | | | |||| | || |||| || || |
Sbjct 2839678 GTGGCATTGGTCTCAACGCTCACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCACCA 2839619
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| || || | ||| | ||||| |||||||| || |||||| ||| || ||||| |
Sbjct 2839618 ACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACG 2839559
Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
| | || | ||| ||||| || || |||| | || |||||||| ||||
Sbjct 2839558 TCGACCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATTTACCTTGAGCCGTGGC 2839502
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|||| || || | |||||| | || ||||| ||||| || | ||||||| ||
Sbjct 2839501 ACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTG 2839442
Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753
||| || || ||| |||||||||||| || ||||| |||||||||||||| ||| |||
Sbjct 2839441 CCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA 2839382
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812
| | | ||| | ||| | || || | || ||||| || | || ||| | ||
Sbjct 2839381 ACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTAT-GGC 2839323
Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCG 104866
|||||||| || ||| | ||| ||||||||| || | | ||||| |||
Sbjct 2839322 GAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATC 2839263
Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926
| || |||| || | ||| | || || ||| || |||| ||||||||||| |
Sbjct 2839262 AAGG-CCCAGAAGC-----TTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAAC 2839209
Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986
|| | |||||||||||| || || |||| ||||| || || ||||| | ||
Sbjct 2839208 CCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACT 2839149
Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGC 105045
||| || ||||| || || || || ||| | || | | | || |||||| ||
Sbjct 2839148 ATCCGCAGCTCCAACCTTTGCACTGAGATCATTGAGTACTGCGCAC-CCGATGAGGTCGC 2839090
Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACAT 105104
||| || ||| | || || | ||||| |||| | || || | || || | | |
Sbjct 2839089 TGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGTTGACTACAACGATGGTGTC-T 2839031
Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164
|| | | || || ||||| ||||| | || ||| | |||| | |
Sbjct 2839030 ACGACTTCCAGAAGCTTCACGAGGTTACTCAGGTCGTTGTTCGCAACTTGAACAAGATCA 2838971
Query 105165 TTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221
||||| || ||||||||| ||| ||||| || || ||| | ||||| |
Sbjct 2838970 TTGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAACAGCAACATGCGTCACCGCC 2838914
Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT- 105280
| |||||||| ||||| |||||||| || |||| ||| | ||| || || |||
Sbjct 2838913 CCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTTTC 2838855
Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340
|| || || || || |||| | || || |||||||| || ||||| |||
Sbjct 2838854 GAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCT 2838795
Query 105341 CTT--GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398
||| | | |||| || |||| ||| || || | || || | ||||| |
Sbjct 2838794 CTTACCATGTCTGTTC--AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGCT 2838737
Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 105458
| || || || || | || || | || |||||| | | || || | ||
Sbjct 2838736 CCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCT 2838677
Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518
|| ||||| | || ||||| | ||||||||| | ||| | || |||||| | |||
Sbjct 2838676 GGGATTGGGACTCACTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTCG 2838617
Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578
| ||||| ||||| || |||||||| | || |||||||| || || || ||||| || |
Sbjct 2838616 TTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAGC 2838557
Query 105579 CCTACACGACGAACATCTA 105597
||||||| | ||||||||
Sbjct 2838556 CCTACACCTCCAACATCTA 2838538
>seq9
Length=4851470
Score = 127 bits (140), Expect = 2e-24
Identities = 158/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCGCGTTCCTTT 94800
|||| ||||| || || ||||| |||||||| | ||| || || |||||
Sbjct 3450471 ATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCC---TCCTTC 3450527
Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860
|| |||| || | || ||||| ||||||||||||||||||| ||| | || |
Sbjct 3450528 GCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCC 3450587
Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920
| || | ||||||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct 3450588 TCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTC 3450647
Query 94921 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||| ||||||||||| || ||| || |||||
Sbjct 3450648 ATCTCCCGTGACGAGGGTCTGCACACCGACTTTGC 3450682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260552114160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |