Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 214 2e-50 seq9 127 2e-24 >seq6 Length=6290098 Score = 214 bits (236), Expect = 2e-50 Identities = 898/1399 (64%), Gaps = 43/1399 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| || || || || | || ||| Sbjct 2839916 CCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTC 2839857 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||||| |||| | | ||| || || | || || |||| Sbjct 2839856 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCATGCCTCCCCCACACTCT 2839799 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || ||| |||| |||||||| ||| || ||||| | Sbjct 2839798 TCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAG 2839739 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| || | |||||||| | || || | | || || ||||| ||| ||||| Sbjct 2839738 ACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 2839679 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | || || | | | |||| | || |||| || || | Sbjct 2839678 GTGGCATTGGTCTCAACGCTCACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCACCA 2839619 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | ||| | ||||| |||||||| || |||||| ||| || ||||| | Sbjct 2839618 ACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACG 2839559 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||||| || || |||| | || |||||||| |||| Sbjct 2839558 TCGACCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATTTACCTTGAGCCGTGGC 2839502 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| || || | |||||| | || ||||| ||||| || | ||||||| || Sbjct 2839501 ACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTG 2839442 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || || ||| |||||||||||| || ||||| |||||||||||||| ||| ||| Sbjct 2839441 CCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA 2839382 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 | | | ||| | ||| | || || | || ||||| || | || ||| | || Sbjct 2839381 ACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTAT-GGC 2839323 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCG 104866 |||||||| || ||| | ||| ||||||||| || | | ||||| ||| Sbjct 2839322 GAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATC 2839263 Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || |||| || | ||| | || || ||| || |||| ||||||||||| | Sbjct 2839262 AAGG-CCCAGAAGC-----TTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAAC 2839209 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||||||||| || || |||| ||||| || || ||||| | || Sbjct 2839208 CCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACT 2839149 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGC 105045 ||| || ||||| || || || || ||| | || | | | || |||||| || Sbjct 2839148 ATCCGCAGCTCCAACCTTTGCACTGAGATCATTGAGTACTGCGCAC-CCGATGAGGTCGC 2839090 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACAT 105104 ||| || ||| | || || | ||||| |||| | || || | || || | | | Sbjct 2839089 TGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGTTGACTACAACGATGGTGTC-T 2839031 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 || | | || || ||||| ||||| | || ||| | |||| | | Sbjct 2839030 ACGACTTCCAGAAGCTTCACGAGGTTACTCAGGTCGTTGTTCGCAACTTGAACAAGATCA 2838971 Query 105165 TTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 ||||| || ||||||||| ||| ||||| || || ||| | ||||| | Sbjct 2838970 TTGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAACAGCAACATGCGTCACCGCC 2838914 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT- 105280 | |||||||| ||||| |||||||| || |||| ||| | ||| || || ||| Sbjct 2838913 CCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTTTC 2838855 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || || || || |||| | || || |||||||| || ||||| ||| Sbjct 2838854 GAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCT 2838795 Query 105341 CTT--GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 ||| | | |||| || |||| ||| || || | || || | ||||| | Sbjct 2838794 CTTACCATGTCTGTTC--AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGCT 2838737 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 105458 | || || || || | || || | || |||||| | | || || | || Sbjct 2838736 CCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCT 2838677 Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 || ||||| | || ||||| | ||||||||| | ||| | || |||||| | ||| Sbjct 2838676 GGGATTGGGACTCACTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTCG 2838617 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 | ||||| ||||| || |||||||| | || |||||||| || || || ||||| || | Sbjct 2838616 TTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAGC 2838557 Query 105579 CCTACACGACGAACATCTA 105597 ||||||| | |||||||| Sbjct 2838556 CCTACACCTCCAACATCTA 2838538 >seq9 Length=4851470 Score = 127 bits (140), Expect = 2e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCGCGTTCCTTT 94800 |||| ||||| || || ||||| |||||||| | ||| || || ||||| Sbjct 3450471 ATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCC---TCCTTC 3450527 Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || |||| || | || ||||| ||||||||||||||||||| ||| | || | Sbjct 3450528 GCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCC 3450587 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 | || | ||||||||||||||| || |||||||| ||||| ||||||||||||||| Sbjct 3450588 TCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTC 3450647 Query 94921 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||||||||| || ||| || ||||| Sbjct 3450648 ATCTCCCGTGACGAGGGTCTGCACACCGACTTTGC 3450682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260552114160