Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6 150 5e-31 seq10 105 2e-17 seq17 89.7 2e-12 >seq6 Length=6290098 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||| ||||| || ||||| || ||||| Sbjct 607613 CATACCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATC 607554 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || ||||| ||||| || ||||| || ||||| | || ||||| || || Sbjct 607553 CGACAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGG 607494 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || ||||| || || || | || || || ||||| | || || | ||| Sbjct 607493 AGGAATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTC 607434 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || |||| ||||| || || || || || || ||||||||||| Sbjct 607433 AACCTCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || || || || || || || ||||| | || || |||||| Sbjct 607822 AGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCT 607763 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || |||||||| ||||| ||||| ||||| ||||| ||||| || || || ||| Sbjct 607762 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCC 607703 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || ||||||||||||| ||||||| || ||||| | ||||| ||| Sbjct 607702 TGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTC 607643 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || || || || |||||||| Sbjct 607642 TTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611 Score = 134 bits (148), Expect = 4e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| | ||| || || ||||| || ||||| || || || Sbjct 607385 CATACCACCGCGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTC 607326 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| |||||||| || ||||||||||| | ||| ||||| ||||| Sbjct 607325 GGACAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGG 607266 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||||||||| || | || ||||| || || | |||||| | || Sbjct 607265 GGGGATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTC 607206 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || | ||||| || || || || || || Sbjct 607205 GACCTCAAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 607167 Score = 120 bits (132), Expect = 9e-22 Identities = 450/701 (64%), Gaps = 6/701 (1%) Strand=Plus/Minus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || |||||||| || || || || || || |||| Sbjct 3565531 ACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATT 3565472 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || || || ||||| || ||||| || || Sbjct 3565471 GCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCTGCCGCCATTGCCTACGGT 3565412 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | || || || |||| || || || | |||||||||||| Sbjct 3565411 CTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGACCTTGGTGGTGGTACT 3565352 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || | || |||| ||||| ||||| || || || | || |||||| Sbjct 3565351 TTCGATGTGTCTCTTTTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCACCGCTGGT 3565292 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || |||||||| || || || || || Sbjct 3565291 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTCAACGAG 3565232 Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 || ||||| ||||| || | || | || | | || |||| || || | Sbjct 3565231 TTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCCAACGCCCGCGCCCTGCGCCGTCTCCG 3565173 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 || || || || ||||| ||||| || | || || || |||| ||||| || || || Sbjct 3565172 CACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCCATCGAGAT 3565113 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 || || || || || | || |||| | || || || |||||||| || || || Sbjct 3565112 CGACTCCCTGTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGCTTCGAGGA 3565053 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 | || ||| || || | | || || | || || || || | | || || Sbjct 3565052 GCTCTGCCAGGACCTGTTCCGCTCTACCATCCAGCCCGTCGACCGTGTCCTCACCGACGC 3564993 Query 350158 AAAAATGTCCAAAAAT--CAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 || ||| | || | ||| | | || | || | || || ||||| || ||||| Sbjct 3564992 --CAAGGTCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCACCCGTATC 3564935 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATT 350275 || || || || | | || || | || || ||||| || || | || || Sbjct 3564934 CCCCGTGTCCAGAAGCTCATCTCCGATTACTTCAACGGCAAGGAGCCCAACAAGTCCATC 3564875 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 || || ||||| |||||||| || |||||||| || ||||| Sbjct 3564874 AACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGC 3564834 Score = 116 bits (128), Expect = 1e-20 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || ||||||||||| || || || || || || Sbjct 607099 CATACCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 607040 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| || || ||||| |||||||| || Sbjct 607039 GGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGG 606980 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || |||||||| | ||| || | || Sbjct 606979 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTC 606920 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || | ||||| ||||| Sbjct 606919 GACCTCGAGAGTGATGGTCTTGCCGGT 606893 >seq10 Length=4416304 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 3556402 CATACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3556461 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || ||||| || ||||| || || ||||| || || Sbjct 3556462 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGG 3556521 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || ||||| || || | || || | || Sbjct 3556522 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTC 3556581 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || || |||||||| Sbjct 3556582 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632 >seq17 Length=2392175 Score = 89.7 bits (98), Expect = 2e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 |||||||| || ||||| || || || || | ||||| | ||||||||||||||||| Sbjct 1461334 ACACCAGCGAAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATTGACTGG 1461275 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 || || || ||||||||||| || |||||| |||||| Sbjct 1461274 GCCGCGATGACGCCAACCATCTCACCAGGACTGACAA 1461238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253739917302