Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq6 150 5e-31
seq10 105 2e-17
seq17 89.7 2e-12
>seq6
Length=6290098
Score = 150 bits (166), Expect = 5e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || ||||| ||||| ||||| || ||||| || |||||
Sbjct 607613 CATACCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATC 607554
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| || || || ||||| ||||| || ||||| || ||||| | || ||||| || ||
Sbjct 607553 CGACAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGG 607494
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || ||||| || || || | || || || ||||| | || || | |||
Sbjct 607493 AGGAATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTC 607434
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || |||| ||||| || || || || || || |||||||||||
Sbjct 607433 AACCTCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 143 bits (158), Expect = 8e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || ||||| || || || || || || || || ||||| | || || ||||||
Sbjct 607822 AGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCT 607763
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || |||||||| ||||| ||||| ||||| ||||| ||||| || || || |||
Sbjct 607762 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCC 607703
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || | || ||||||||||||| ||||||| || ||||| | ||||| |||
Sbjct 607702 TGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTC 607643
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || || || || ||||||||
Sbjct 607642 TTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611
Score = 134 bits (148), Expect = 4e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | ||||| | ||| || || ||||| || ||||| || || ||
Sbjct 607385 CATACCACCGCGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTC 607326
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| |||||||| || ||||||||||| | ||| ||||| |||||
Sbjct 607325 GGACAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGG 607266
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||||||||| || | || ||||| || || | |||||| | ||
Sbjct 607265 GGGGATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTC 607206
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| ||||| || | ||||| || || || || || ||
Sbjct 607205 GACCTCAAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 607167
Score = 120 bits (132), Expect = 9e-22
Identities = 450/701 (64%), Gaps = 6/701 (1%)
Strand=Plus/Minus
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || ||||| || || || |||||||| || || || || || || ||||
Sbjct 3565531 ACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATT 3565472
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || || || | || || || || || || ||||| || ||||| || ||
Sbjct 3565471 GCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCTGCCGCCATTGCCTACGGT 3565412
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||| || | | || || || |||| || || || | ||||||||||||
Sbjct 3565411 CTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGACCTTGGTGGTGGTACT 3565352
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || | || |||| ||||| ||||| || || || | || ||||||
Sbjct 3565351 TTCGATGTGTCTCTTTTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCACCGCTGGT 3565292
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || || || || |||||||| || || || || ||
Sbjct 3565291 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTCAACGAG 3565232
Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977
|| ||||| ||||| || | || | || | | || |||| || || |
Sbjct 3565231 TTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCCAACGCCCGCGCCCTGCGCCGTCTCCG 3565173
Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037
|| || || || ||||| ||||| || | || || || |||| ||||| || || ||
Sbjct 3565172 CACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCCATCGAGAT 3565113
Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097
|| || || || || | || |||| | || || || |||||||| || || ||
Sbjct 3565112 CGACTCCCTGTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGCTTCGAGGA 3565053
Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157
| || ||| || || | | || || | || || || || | | || ||
Sbjct 3565052 GCTCTGCCAGGACCTGTTCCGCTCTACCATCCAGCCCGTCGACCGTGTCCTCACCGACGC 3564993
Query 350158 AAAAATGTCCAAAAAT--CAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215
|| ||| | || | ||| | | || | || | || || ||||| || |||||
Sbjct 3564992 --CAAGGTCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCACCCGTATC 3564935
Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATT 350275
|| || || || | | || || | || || ||||| || || | || ||
Sbjct 3564934 CCCCGTGTCCAGAAGCTCATCTCCGATTACTTCAACGGCAAGGAGCCCAACAAGTCCATC 3564875
Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316
|| || ||||| |||||||| || |||||||| || |||||
Sbjct 3564874 AACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGC 3564834
Score = 116 bits (128), Expect = 1e-20
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | || ||||||||||| || || || || || ||
Sbjct 607099 CATACCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 607040
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || ||||| || || ||||| |||||||| ||
Sbjct 607039 GGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGG 606980
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || ||||| || || | || || |||||||| | ||| || | ||
Sbjct 606979 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTC 606920
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || | ||||| |||||
Sbjct 606919 GACCTCGAGAGTGATGGTCTTGCCGGT 606893
>seq10
Length=4416304
Score = 105 bits (116), Expect = 2e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 3556402 CATACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3556461
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || ||||| || ||||| || || ||||| || ||
Sbjct 3556462 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGG 3556521
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 3556522 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTC 3556581
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || || ||||||||
Sbjct 3556582 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632
>seq17
Length=2392175
Score = 89.7 bits (98), Expect = 2e-12
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553
|||||||| || ||||| || || || || | ||||| | |||||||||||||||||
Sbjct 1461334 ACACCAGCGAAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATTGACTGG 1461275
Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590
|| || || ||||||||||| || |||||| ||||||
Sbjct 1461274 GCCGCGATGACGCCAACCATCTCACCAGGACTGACAA 1461238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253739917302
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |