Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq6 257 2e-63
seq15 113 5e-20
>seq6
Length=6290098
Score = 257 bits (284), Expect = 2e-63
Identities = 518/758 (68%), Gaps = 14/758 (2%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || || | || ||| ||||| || | ||| ||| ||||| |||
Sbjct 2839903 TCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTCATCGAGACCTACA 2839844
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | |||| ||| || || ||| | || || || ||||||||||||||
Sbjct 2839843 ACCTCATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACACTCTTCAACGCTGGTACCC 2839784
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
||| ||| |||| |||||||| || | |||||||| ||||| || || || |
Sbjct 2839783 CTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTA 2839724
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| || |||||| || ||| ||||||||| | | ||||| || ||| ||
Sbjct 2839723 TCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCA 2839664
Query 53433 ACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| |||| | ||| ||||| | ||| | || || || |||||| | | |
Sbjct 2839663 AC-GCTC-ACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACCTCGAA 2839606
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| || | || ||||| || ||||| |||||||| || || |||||| ||||||||||
Sbjct 2839605 CGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGACCAGGGTGG 2839546
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | ||||| || ||||| |||||||||||||||||| | | ||
Sbjct 2839545 CAACAAGCGTCCTGGCGCTTTCGCTATTTACCTTGAGCCGTGGCACGCCGACGTCTTCGA 2839486
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| | || |||| ||| || || | || ||| | || ||||||||| ||
Sbjct 2839485 GTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCT 2839426
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
||||| ||||| || || || |||||| | | || |||||| ||| || ||| |||
Sbjct 2839425 CGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGACTGGACCCT 2839366
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
|||||||| || |||||||| ||||| | | || ||| || |||||||| | |
Sbjct 2839365 CATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTG-CTATGGCGAGGAGTTCGAGGCCT 2839307
Query 53790 TGTATCGGACGTACGCAGTTC-AGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845
|||| || ||||| || | ||||| | ||||| | ||||||| | ||
Sbjct 2839306 TGTACGAGAAGTACG-AGCGCGAGGGCAAGGGTCGCAAGACCA---TCAAGGCCCAGAAG 2839251
Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905
| ||| |||| |||||| || ||| ||||| || | || | |||| ||||||
Sbjct 2839250 CTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTTTACAAG 2839191
Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
||| | | |||| |||||||||||||||||| ||||
Sbjct 2839190 GATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 2839153
Score = 107 bits (118), Expect = 2e-18
Identities = 295/443 (67%), Gaps = 23/443 (5%)
Strand=Plus/Minus
Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553
||||||| || || ||||| || || || || | |||||| |||||||||||||| |
Sbjct 2838622 TGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCT 2838563
Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613
||||||| ||||| |||||||||||| || || || || || ||||| |
Sbjct 2838562 TCGAGCCCTACACCTCCAACATCTACCAACGTCGTGTTCTTGCCGGCGAGTTCCAGGTTG 2838503
Query 55614 TCAACAAGCACCTCGTC----AAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--A 55667
||||| ||| || ||||| || | || | |||| ||| | |
Sbjct 2838502 TCAACC----CCTGGTTGTTGAAGGATCTCGTCGACATGGGCCTGTGGT--CCGATGCCA 2838449
Query 55668 TCAAGA--CGGATATTGTGCG-GAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT- 55720
| |||| || || | || |||||| || ||||||| | | |||||
Sbjct 2838448 TGAAGAACCGTATCATCGCCGAGAACGGT---TCTATCCAGAACATCCCCAACATTCCCG 2838392
Query 55721 CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC 55780
||| | |||||| | ||| ||| || |||||||| | ||| | | || |
Sbjct 2838391 CTGAGG-TCAAGGCTCTGTACAAGACCGTTTGGGAGATCTCCCAGCGCACCGTTGTTCAG 2838333
Query 55781 ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAG 55840
||| ||| || |||||||| | |||||||||||||||||| || |||||| |||| ||
Sbjct 2838332 ATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCACATGAAG 2838273
Query 55841 AATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAG 55900
| || || ||| |||| | | | |||||||| ||| |||||| || ||||||
Sbjct 2838272 GACCCGACAATGGGCAAGATCACCAGTATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAG 2838213
Query 55901 ACGGGTATGTACTATCTGCGGAC 55923
||||| |||||||| ||||| ||
Sbjct 2838212 ACGGGCATGTACTACCTGCGTAC 2838190
>seq15
Length=3115873
Score = 113 bits (124), Expect = 5e-20
Identities = 196/285 (69%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
||||| || | |||||| ||||| ||||| || || || | || || | ||| |||
Sbjct 2228633 ATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGGGAACCGAAGTTTCCGGAG 2228692
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
||||| | | ||||| |||||| | ||||| || |||| || | | || ||
Sbjct 2228693 GGCTCTAAGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGGGCGAGTCCAATGATGGTC 2228752
Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214
||||||| | ||||||||||||| || | |||||||| | ||||| || |||||
Sbjct 2228753 TGCTGCAGAGACACTTCACCGTGGTGGTAGGAAGTCTGCTCAGAAATGTAACCGGCCAAT 2228812
Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274
| | |||||| || | || |||| |||||| ||||||||| || || || ||
Sbjct 2228813 TCAACGACCTTCTGATCTTTGACCAAGTTCCTCTTGAAACAGGCGTACATGACTTTACGT 2228872
Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319
|| || ||||| ||||||| || ||||| |||||| ||
Sbjct 2228873 TGACCGGGCTTCAATCCGTCCAGAACAGAGGGAATGGAACGCATG 2228917
Score = 98.7 bits (108), Expect = 1e-15
Identities = 198/289 (69%), Gaps = 6/289 (2%)
Strand=Plus/Plus
Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369
||||||||||| ||| |||||||| ||||| ||||| || | |||||| | |||
Sbjct 2228632 AATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGGGAACCGAAGTTTCCGGA 2228691
Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429
||||| ||| ||| | |||||| | ||||||||| | || || | | || ||
Sbjct 2228692 GGGCTCTAAGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGGGCGAGTCCAATGATGGT 2228751
Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489
|| || | | ||||| ||||| || | |||||||| | | ||| || ||||
Sbjct 2228752 CTGCTGCAGAGACACTTCACCGTGGTGGTAGGAAGTCTGCTCAGAAATGTAACCGGCCAA 2228811
Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547
| | | |||||| || | |||| || |||| |||||| ||||| || || || ||
Sbjct 2228812 TTCAACGACCTTCTGATCTTTGAC--CAAGTTCCTCTTGAAACAGGCGTACATGACTTTA 2228869
Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTG 117595
|| |||| ||||||| || ||| || ||||| || |||||| ||
Sbjct 2228870 CGTTGACCGGGCTTCAATCCGTCCAGAAC-AGAGGGAATGGAACGCATG 2228917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215767433200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |