Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 257 2e-63 seq15 113 5e-20 >seq6 Length=6290098 Score = 257 bits (284), Expect = 2e-63 Identities = 518/758 (68%), Gaps = 14/758 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | || ||| ||||| || | ||| ||| ||||| ||| Sbjct 2839903 TCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTCATCGAGACCTACA 2839844 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||| ||| || || ||| | || || || |||||||||||||| Sbjct 2839843 ACCTCATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACACTCTTCAACGCTGGTACCC 2839784 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| ||| |||| |||||||| || | |||||||| ||||| || || || | Sbjct 2839783 CTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTA 2839724 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| || ||| ||||||||| | | ||||| || ||| || Sbjct 2839723 TCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCA 2839664 Query 53433 ACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || |||| | ||| ||||| | ||| | || || || |||||| | | | Sbjct 2839663 AC-GCTC-ACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACCTCGAA 2839606 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || | || ||||| || ||||| |||||||| || || |||||| |||||||||| Sbjct 2839605 CGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGACCAGGGTGG 2839546 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | ||||| || ||||| |||||||||||||||||| | | || Sbjct 2839545 CAACAAGCGTCCTGGCGCTTTCGCTATTTACCTTGAGCCGTGGCACGCCGACGTCTTCGA 2839486 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| | || |||| ||| || || | || ||| | || ||||||||| || Sbjct 2839485 GTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCT 2839426 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||| ||||| || || || |||||| | | || |||||| ||| || ||| ||| Sbjct 2839425 CGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGACTGGACCCT 2839366 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||| || |||||||| ||||| | | || ||| || |||||||| | | Sbjct 2839365 CATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTG-CTATGGCGAGGAGTTCGAGGCCT 2839307 Query 53790 TGTATCGGACGTACGCAGTTC-AGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 |||| || ||||| || | ||||| | ||||| | ||||||| | || Sbjct 2839306 TGTACGAGAAGTACG-AGCGCGAGGGCAAGGGTCGCAAGACCA---TCAAGGCCCAGAAG 2839251 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| |||| |||||| || ||| ||||| || | || | |||| |||||| Sbjct 2839250 CTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTTTACAAG 2839191 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||| | | |||| |||||||||||||||||| |||| Sbjct 2839190 GATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 2839153 Score = 107 bits (118), Expect = 2e-18 Identities = 295/443 (67%), Gaps = 23/443 (5%) Strand=Plus/Minus Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553 ||||||| || || ||||| || || || || | |||||| |||||||||||||| | Sbjct 2838622 TGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCT 2838563 Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613 ||||||| ||||| |||||||||||| || || || || || ||||| | Sbjct 2838562 TCGAGCCCTACACCTCCAACATCTACCAACGTCGTGTTCTTGCCGGCGAGTTCCAGGTTG 2838503 Query 55614 TCAACAAGCACCTCGTC----AAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--A 55667 ||||| ||| || ||||| || | || | |||| ||| | | Sbjct 2838502 TCAACC----CCTGGTTGTTGAAGGATCTCGTCGACATGGGCCTGTGGT--CCGATGCCA 2838449 Query 55668 TCAAGA--CGGATATTGTGCG-GAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT- 55720 | |||| || || | || |||||| || ||||||| | | ||||| Sbjct 2838448 TGAAGAACCGTATCATCGCCGAGAACGGT---TCTATCCAGAACATCCCCAACATTCCCG 2838392 Query 55721 CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC 55780 ||| | |||||| | ||| ||| || |||||||| | ||| | | || | Sbjct 2838391 CTGAGG-TCAAGGCTCTGTACAAGACCGTTTGGGAGATCTCCCAGCGCACCGTTGTTCAG 2838333 Query 55781 ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAG 55840 ||| ||| || |||||||| | |||||||||||||||||| || |||||| |||| || Sbjct 2838332 ATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCACATGAAG 2838273 Query 55841 AATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAG 55900 | || || ||| |||| | | | |||||||| ||| |||||| || |||||| Sbjct 2838272 GACCCGACAATGGGCAAGATCACCAGTATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAG 2838213 Query 55901 ACGGGTATGTACTATCTGCGGAC 55923 ||||| |||||||| ||||| || Sbjct 2838212 ACGGGCATGTACTACCTGCGTAC 2838190 >seq15 Length=3115873 Score = 113 bits (124), Expect = 5e-20 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 ||||| || | |||||| ||||| ||||| || || || | || || | ||| ||| Sbjct 2228633 ATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGGGAACCGAAGTTTCCGGAG 2228692 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| | | ||||| |||||| | ||||| || |||| || | | || || Sbjct 2228693 GGCTCTAAGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGGGCGAGTCCAATGATGGTC 2228752 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||||||| | ||||||||||||| || | |||||||| | ||||| || ||||| Sbjct 2228753 TGCTGCAGAGACACTTCACCGTGGTGGTAGGAAGTCTGCTCAGAAATGTAACCGGCCAAT 2228812 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | | |||||| || | || |||| |||||| ||||||||| || || || || Sbjct 2228813 TCAACGACCTTCTGATCTTTGACCAAGTTCCTCTTGAAACAGGCGTACATGACTTTACGT 2228872 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 || || ||||| ||||||| || ||||| |||||| || Sbjct 2228873 TGACCGGGCTTCAATCCGTCCAGAACAGAGGGAATGGAACGCATG 2228917 Score = 98.7 bits (108), Expect = 1e-15 Identities = 198/289 (69%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| ||| |||||||| ||||| ||||| || | |||||| | ||| Sbjct 2228632 AATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGGGAACCGAAGTTTCCGGA 2228691 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 ||||| ||| ||| | |||||| | ||||||||| | || || | | || || Sbjct 2228692 GGGCTCTAAGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGGGCGAGTCCAATGATGGT 2228751 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 || || | | ||||| ||||| || | |||||||| | | ||| || |||| Sbjct 2228752 CTGCTGCAGAGACACTTCACCGTGGTGGTAGGAAGTCTGCTCAGAAATGTAACCGGCCAA 2228811 Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547 | | | |||||| || | |||| || |||| |||||| ||||| || || || || Sbjct 2228812 TTCAACGACCTTCTGATCTTTGAC--CAAGTTCCTCTTGAAACAGGCGTACATGACTTTA 2228869 Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTG 117595 || |||| ||||||| || ||| || ||||| || |||||| || Sbjct 2228870 CGTTGACCGGGCTTCAATCCGTCCAGAAC-AGAGGGAATGGAACGCATG 2228917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215767433200