Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq6 315 8e-81
seq10 172 6e-38
seq14 120 3e-22
>seq6
Length=6290098
Score = 315 bits (348), Expect = 8e-81
Identities = 1147/1770 (65%), Gaps = 73/1770 (4%)
Strand=Plus/Plus
Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090
|||| |||| ||||| |||||||||||||||||||| || |||||||||| | |||
Sbjct 2838183 TGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTG 2838242
Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150
|||| ||| ||| | | ||| |||| || |||| |||||| || ||||| |||||
Sbjct 2838243 CATACTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTG 2838302
Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210
|||||| || ||||| || || ||||| | || || | || | || |||||
Sbjct 2838303 GTCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATCTCCCA 2838362
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| | ||| | ||||||| | | | | |
Sbjct 2838363 AACGGTCTTGTACAGAGCCTTG---ACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA 2838419
Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||||| || | || | || |||| || | ||| | || | | | ||
Sbjct 2838420 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAG 2838479
Query 80325 ATCTTTCA-CAAG--GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
||| |||| ||| | | ||| || | || |||| || || || ||||| |
Sbjct 2838480 ATCCTTCAACAACCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGAACACGACGTTG 2838536
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | ||||| ||||| || ||||||||| || | |||||| | |||
Sbjct 2838537 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGA 2838596
Query 80442 CGCCGTCGGCATCGG-GC--CGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATC 80498
|| || ||||| || || ||| ||| | || || |||| ||||||| |||||| |
Sbjct 2838597 GGCAGTAGGCATGGGAGCAACGAGCAA-ACTG--TTGCGCACACCGTGCTCCTTGATCTG 2838653
Query 80499 CTCGCGCA---AATCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCG 80550
||| || | || | ||| | ||| | ||| |||| ||||||||||
Sbjct 2838654 CTCCTTCAGTGAGTCCCAATCCCAGAGGTCAG----AGGGCT-TGACATTCCACATGTCG 2838708
Query 80551 TGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTC 80610
| ||| | ||| |||| || || || ||| || |||| ||| | ||||||| |
Sbjct 2838709 TACTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCC 2838768
Query 80611 TTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTG 80670
|||||||||| | ||| |||| || ||||| || ||| ||| |||| ||||
Sbjct 2838769 TTGGCCAGCTGAACAGACATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTG 2838828
Query 80671 TTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCC 80730
|| | | | || |||| || ||||| | || || | | ||| | |||||
Sbjct 2838829 TTGAGATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCA 2838888
Query 80731 AGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGG 80789
|| ||||| || || | | || |||||||| ||| |||| | | || ||||| ||
Sbjct 2838889 AGACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTT-GCTGTTGCGAGCCTCGGG 2838947
Query 80790 AATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAAC 80849
|| ||||| ||| ||| |||| ||||| |||||| ||| ||| | |||||
Sbjct 2838948 AACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAAC 2839007
Query 80850 ATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCT 80903
|| ||||| ||||| |||||| | | ||| | || || | || ||
Sbjct 2839008 CTCGTGAAGCTTCTGGAAGTCGTAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGC 2839067
Query 80904 CAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGT 80963
||||| |||| ||||| || || ||||| || | | |||| | ||| || ||
Sbjct 2839068 AAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGT 2839127
Query 80964 GCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGC 81023
||| | || || || || || ||||| |||||||| |||| |||| |||
Sbjct 2839128 GCAAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGC 2839187
Query 81024 GTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083
|||||||| |||| | ||| | || |||||| ||| | || ||||||||| | |||
Sbjct 2839188 ATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCA 2839247
Query 81084 AATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGC 81143
|| || | ||||||| |||||| ||||| ||| | | ||||| ||||
Sbjct 2839248 AAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAA 2839307
Query 81144 TTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202
| ||||||| | || | | ||| ||| ||| | |||||||| || |||||||| |
Sbjct 2839308 GGCCTCGAACTCCTCGCCATAGCAGT-CAGCCAGGCCAGGGCACTCATTGGGGCACATGA 2839366
Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262
|| |||||||| || ||||| || ||||||||| || ||||||||||| |||
Sbjct 2839367 GGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGA 2839426
Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322
||| ||||| ||| || ||||||| | || ||||| |||||| || | || |
Sbjct 2839427 GGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACT 2839486
Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG--ATCGAC----CCCTTGCGAC 81376
| | || ||| || ||||| ||||| || || | ||| | || | | ||||
Sbjct 2839487 CGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTG---T 2839543
Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436
||||||||||| |||||| || ||||| |||||| ||||| | ||| || |||| ||
Sbjct 2839544 TGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACAC 2839603
Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGAT 81494
| | || ||||| || || | ||| || || |||| || || || |
Sbjct 2839604 CGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGT 2839663
Query 81495 TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATA 81554
|| ||||| |||||||| | | ||| || ||| || || || | ||| || ||
Sbjct 2839664 TG--AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTA 2839721
Query 81555 AATTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATC 81606
|| ||||| || |||| |||||||| ||||| ||| ||||| || || |
Sbjct 2839722 GATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-C 2839779
Query 81607 TGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTT 81666
|||||| | || || ||||| ||||| |||| || || |||| | | |
Sbjct 2839780 TGAGGG------GTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTG 2839833
Query 81667 GACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCT 81726
||||| |||| ||||| || ||||||| | | ||||| || |||| ||
Sbjct 2839834 GACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCA 2839893
Query 81727 ACACGCATAAACATGTACTGGGGCGTCTCG 81756
|||||||| | ||||| |||||| |||||
Sbjct 2839894 ACACGCATGATCATGTGCTGGGGTCTCTCG 2839923
Score = 176 bits (194), Expect = 5e-39
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
||||||||||| || |||||||| || || |||||||| ||||| ||||| ||| |
Sbjct 607167 GTCAAGACGCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 607226
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || |||||||| |||||||| || || || |||||||||||| | ||
Sbjct 607227 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATC 607286
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| |||||||| ||||||| || ||||| | ||||| || | || |||||
Sbjct 607287 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAG 607346
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| || ||| | || | ||||||||||||||
Sbjct 607347 TCCACACTCCATTTGGTTCTTCGTCTTCGCGGTGG 607381
Score = 176 bits (194), Expect = 5e-39
Identities = 179/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| || || ||||| ||||| | || || |||||| |
Sbjct 607611 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCT 607670
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| ||||| | || || |||||||||||||| ||||| || ||||||
Sbjct 607671 GACACGATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 607730
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||| ||||| || || |||| ||| || || ||| || || ||
Sbjct 607731 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGC-GATTACAA 607789
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| |||||||| || || ||||| ||| | |||||||| || || ||
Sbjct 607790 CATCCAGAAGGAATCAACCCTCCATCTGGTCCTCCGTCTTCGTGGCGGCCA 607840
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| ||||| |||||||| ||||| || |||||||| ||
Sbjct 607383 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 607442
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||| | || || || || |||||||| |||||||| ||||||
Sbjct 607443 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCGACCAG 607502
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || ||||| || ||||||| ||||||| | | || || ||
Sbjct 607503 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCGGATTACAAC 607562
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || ||||| ||||| ||| ||||||| || |||||
Sbjct 607563 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGTCTGCGTGGTGG 607609
Score = 150 bits (166), Expect = 2e-31
Identities = 155/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || ||||| ||||| ||||| |||| ||||| || ||||| |
Sbjct 606893 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGATAACGTGAAGTCC 606952
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| ||||| || || ||||||||||| ||||| ||||| |||
Sbjct 606953 AAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 607012
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||| | || ||||| | ||||| || |||| ||||| || ||||| ||
Sbjct 607013 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 607072
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | || ||||| |||||
Sbjct 607073 TTGGTTCTCCGCCTTCGTGGTGG 607095
>seq10
Length=4416304
Score = 172 bits (190), Expect = 6e-38
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || || ||||||||||| || |||||||| |||||
Sbjct 3556635 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 3556576
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| ||||| || |||
Sbjct 3556575 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAC 3556516
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| || || || || || ||||| |||||||| | || ||||| | |||||
Sbjct 3556515 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 3556456
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| || || || ||| |||| || || |||||
Sbjct 3556455 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 3556406
>seq14
Length=3529981
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || || ||||| ||||| |||||||| ||||| || | ||
Sbjct 714048 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 714107
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| || || || ||||||||||| ||
Sbjct 714108 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 714167
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||| ||||| || ||||||| || ||||| | ||||| || |||| |||
Sbjct 714168 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 714227
Query 27595 G 27595
|
Sbjct 714228 G 714228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310157618080
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