Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 315 8e-81 seq10 172 6e-38 seq14 120 3e-22 >seq6 Length=6290098 Score = 315 bits (348), Expect = 8e-81 Identities = 1147/1770 (65%), Gaps = 73/1770 (4%) Strand=Plus/Plus Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090 |||| |||| ||||| |||||||||||||||||||| || |||||||||| | ||| Sbjct 2838183 TGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTG 2838242 Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150 |||| ||| ||| | | ||| |||| || |||| |||||| || ||||| ||||| Sbjct 2838243 CATACTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTG 2838302 Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210 |||||| || ||||| || || ||||| | || || | || | || ||||| Sbjct 2838303 GTCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATCTCCCA 2838362 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| | ||| | ||||||| | | | | | Sbjct 2838363 AACGGTCTTGTACAGAGCCTTG---ACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA 2838419 Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| || | || | || |||| || | ||| | || | | | || Sbjct 2838420 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAG 2838479 Query 80325 ATCTTTCA-CAAG--GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| |||| ||| | | ||| || | || |||| || || || ||||| | Sbjct 2838480 ATCCTTCAACAACCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGAACACGACGTTG 2838536 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || ||||||||| || | |||||| | ||| Sbjct 2838537 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGA 2838596 Query 80442 CGCCGTCGGCATCGG-GC--CGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATC 80498 || || ||||| || || ||| ||| | || || |||| ||||||| |||||| | Sbjct 2838597 GGCAGTAGGCATGGGAGCAACGAGCAA-ACTG--TTGCGCACACCGTGCTCCTTGATCTG 2838653 Query 80499 CTCGCGCA---AATCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCG 80550 ||| || | || | ||| | ||| | ||| |||| |||||||||| Sbjct 2838654 CTCCTTCAGTGAGTCCCAATCCCAGAGGTCAG----AGGGCT-TGACATTCCACATGTCG 2838708 Query 80551 TGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTC 80610 | ||| | ||| |||| || || || ||| || |||| ||| | ||||||| | Sbjct 2838709 TACTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCC 2838768 Query 80611 TTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTG 80670 |||||||||| | ||| |||| || ||||| || ||| ||| |||| |||| Sbjct 2838769 TTGGCCAGCTGAACAGACATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTG 2838828 Query 80671 TTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCC 80730 || | | | || |||| || ||||| | || || | | ||| | ||||| Sbjct 2838829 TTGAGATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCA 2838888 Query 80731 AGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGG 80789 || ||||| || || | | || |||||||| ||| |||| | | || ||||| || Sbjct 2838889 AGACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTT-GCTGTTGCGAGCCTCGGG 2838947 Query 80790 AATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAAC 80849 || ||||| ||| ||| |||| ||||| |||||| ||| ||| | ||||| Sbjct 2838948 AACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAAC 2839007 Query 80850 ATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCT 80903 || ||||| ||||| |||||| | | ||| | || || | || || Sbjct 2839008 CTCGTGAAGCTTCTGGAAGTCGTAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGC 2839067 Query 80904 CAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGT 80963 ||||| |||| ||||| || || ||||| || | | |||| | ||| || || Sbjct 2839068 AAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGT 2839127 Query 80964 GCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGC 81023 ||| | || || || || || ||||| |||||||| |||| |||| ||| Sbjct 2839128 GCAAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGC 2839187 Query 81024 GTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 |||||||| |||| | ||| | || |||||| ||| | || ||||||||| | ||| Sbjct 2839188 ATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCA 2839247 Query 81084 AATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGC 81143 || || | ||||||| |||||| ||||| ||| | | ||||| |||| Sbjct 2839248 AAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAA 2839307 Query 81144 TTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 | ||||||| | || | | ||| ||| ||| | |||||||| || |||||||| | Sbjct 2839308 GGCCTCGAACTCCTCGCCATAGCAGT-CAGCCAGGCCAGGGCACTCATTGGGGCACATGA 2839366 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 || |||||||| || ||||| || ||||||||| || ||||||||||| ||| Sbjct 2839367 GGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGA 2839426 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||| ||||| ||| || ||||||| | || ||||| |||||| || | || | Sbjct 2839427 GGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACT 2839486 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG--ATCGAC----CCCTTGCGAC 81376 | | || ||| || ||||| ||||| || || | ||| | || | | |||| Sbjct 2839487 CGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTG---T 2839543 Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436 ||||||||||| |||||| || ||||| |||||| ||||| | ||| || |||| || Sbjct 2839544 TGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACAC 2839603 Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGAT 81494 | | || ||||| || || | ||| || || |||| || || || | Sbjct 2839604 CGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGT 2839663 Query 81495 TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATA 81554 || ||||| |||||||| | | ||| || ||| || || || | ||| || || Sbjct 2839664 TG--AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTA 2839721 Query 81555 AATTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATC 81606 || ||||| || |||| |||||||| ||||| ||| ||||| || || | Sbjct 2839722 GATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-C 2839779 Query 81607 TGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTT 81666 |||||| | || || ||||| ||||| |||| || || |||| | | | Sbjct 2839780 TGAGGG------GTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTG 2839833 Query 81667 GACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCT 81726 ||||| |||| ||||| || ||||||| | | ||||| || |||| || Sbjct 2839834 GACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCA 2839893 Query 81727 ACACGCATAAACATGTACTGGGGCGTCTCG 81756 |||||||| | ||||| |||||| ||||| Sbjct 2839894 ACACGCATGATCATGTGCTGGGGTCTCTCG 2839923 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||||||||| || |||||||| || || |||||||| ||||| ||||| ||| | Sbjct 607167 GTCAAGACGCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 607226 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || |||||||| |||||||| || || || |||||||||||| | || Sbjct 607227 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATC 607286 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| |||||||| ||||||| || ||||| | ||||| || | || ||||| Sbjct 607287 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAG 607346 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || ||| | || | |||||||||||||| Sbjct 607347 TCCACACTCCATTTGGTTCTTCGTCTTCGCGGTGG 607381 Score = 176 bits (194), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || || ||||| ||||| | || || |||||| | Sbjct 607611 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCT 607670 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||| | || || |||||||||||||| ||||| || |||||| Sbjct 607671 GACACGATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 607730 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| || || |||| ||| || || ||| || || || Sbjct 607731 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGC-GATTACAA 607789 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| |||||||| || || ||||| ||| | |||||||| || || || Sbjct 607790 CATCCAGAAGGAATCAACCCTCCATCTGGTCCTCCGTCTTCGTGGCGGCCA 607840 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| ||||| |||||||| ||||| || |||||||| || Sbjct 607383 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 607442 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || || || |||||||| |||||||| |||||| Sbjct 607443 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCGACCAG 607502 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| || ||||||| ||||||| | | || || || Sbjct 607503 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCGGATTACAAC 607562 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| ||||| ||| ||||||| || ||||| Sbjct 607563 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGTCTGCGTGGTGG 607609 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||| ||||| ||||| |||| ||||| || ||||| | Sbjct 606893 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGATAACGTGAAGTCC 606952 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||| Sbjct 606953 AAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 607012 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || ||||| | ||||| || |||| ||||| || ||||| || Sbjct 607013 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 607072 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || ||||| ||||| Sbjct 607073 TTGGTTCTCCGCCTTCGTGGTGG 607095 >seq10 Length=4416304 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || ||||||||||| || |||||||| ||||| Sbjct 3556635 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 3556576 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| ||||| || ||| Sbjct 3556575 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAC 3556516 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 3556515 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 3556456 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || ||| |||| || || ||||| Sbjct 3556455 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 3556406 >seq14 Length=3529981 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 714048 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 714107 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| || Sbjct 714108 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 714167 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| || ||||||| || ||||| | ||||| || |||| ||| Sbjct 714168 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 714227 Query 27595 G 27595 | Sbjct 714228 G 714228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310157618080