Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq15 120 2e-22 >seq15 Length=3115873 Score = 120 bits (132), Expect = 2e-22 Identities = 442/693 (64%), Gaps = 61/693 (9%) Strand=Plus/Plus Query 29817 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 29876 |||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| | Sbjct 414030 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 414089 Query 29877 GCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCC 29935 ||| ||||||| ||| ||||||||| ||||| |||| | ||| | | || |||| Sbjct 414090 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 414148 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 ||| | | || | | || ||||||| ||||||||| | ||||||||| ||||| Sbjct 414149 GGTACCAAATCGCACGCCCGCGCAATCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTG 414208 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 30050 ||||| |||||||| |||||||| | |||| |||||| | ||| || ||| | Sbjct 414209 AAGGGCACCCCGAGTCCCATGTCGCAAGACCGCTGGTACAACTGGCAGTGGAGGTGGCCC 414268 Query 30051 -----------CTC---------CGTCGCTC--------------------ACGTAAAAC 30070 ||| ||| || | || |||||| Sbjct 414269 TTTGGCTTCTCCTCGTTTGCGGGCGTGGCACCGCGGGCTCGCGGGTACGAGACATAAAAC 414328 Query 30071 TG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127 || | ||||| |||||||| || || ||||| || || |||||||| Sbjct 414329 TGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGATCCGCTGGGTTCCAT 414385 Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30187 |||| | || |||||| | ||| | ||||| || ||| || | | | | | Sbjct 414386 GCGCTGAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCC 414445 Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 || || || || ||| |||| ||| || | | | ||| |||||| || || || Sbjct 414446 AGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAAG 414505 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || | ||| ||||| |||||||| || || ||||| || |||| | ||| || ||| Sbjct 414506 TGGCGCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGACTTCGCGGTGGGAGAGGCCG 414565 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTT--CTC 30363 |||| | || || | || |||||| ||||||||||||| || || ||| ||| Sbjct 414566 ACGCTGTCGAGGAACTCGCGCGATCCGTTGCCGTCCCAGATCTTGACGCCGGCTTCGCTC 414625 Query 30364 AGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30423 || | | | || || | || ||||| |||||||||||| || || | | ||| || Sbjct 414626 AGGGCGAGCGATGATGTGT-TG--CCCTC-GACGAACCACAGGAGTTCGGCAATGACTGC 414681 Query 30424 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 ||||| | |||||| ||||||||||| Sbjct 414682 GCGGAGGAAGACACGCTTGGTTGTGAGGAGGGG 414714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310231635128