Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq15 120 2e-22
>seq15
Length=3115873
Score = 120 bits (132), Expect = 2e-22
Identities = 442/693 (64%), Gaps = 61/693 (9%)
Strand=Plus/Plus
Query 29817 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 29876
|||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| |
Sbjct 414030 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 414089
Query 29877 GCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCC 29935
||| ||||||| ||| ||||||||| ||||| |||| | ||| | | || ||||
Sbjct 414090 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 414148
Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995
||| | | || | | || ||||||| ||||||||| | ||||||||| |||||
Sbjct 414149 GGTACCAAATCGCACGCCCGCGCAATCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTG 414208
Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 30050
||||| |||||||| |||||||| | |||| |||||| | ||| || ||| |
Sbjct 414209 AAGGGCACCCCGAGTCCCATGTCGCAAGACCGCTGGTACAACTGGCAGTGGAGGTGGCCC 414268
Query 30051 -----------CTC---------CGTCGCTC--------------------ACGTAAAAC 30070
||| ||| || | || ||||||
Sbjct 414269 TTTGGCTTCTCCTCGTTTGCGGGCGTGGCACCGCGGGCTCGCGGGTACGAGACATAAAAC 414328
Query 30071 TG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127
|| | ||||| |||||||| || || ||||| || || ||||||||
Sbjct 414329 TGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGATCCGCTGGGTTCCAT 414385
Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30187
|||| | || |||||| | ||| | ||||| || ||| || | | | | |
Sbjct 414386 GCGCTGAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCC 414445
Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247
|| || || || ||| |||| ||| || | | | ||| |||||| || || ||
Sbjct 414446 AGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAAG 414505
Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307
|| | ||| ||||| |||||||| || || ||||| || |||| | ||| || |||
Sbjct 414506 TGGCGCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGACTTCGCGGTGGGAGAGGCCG 414565
Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTT--CTC 30363
|||| | || || | || |||||| ||||||||||||| || || ||| |||
Sbjct 414566 ACGCTGTCGAGGAACTCGCGCGATCCGTTGCCGTCCCAGATCTTGACGCCGGCTTCGCTC 414625
Query 30364 AGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30423
|| | | | || || | || ||||| |||||||||||| || || | | ||| ||
Sbjct 414626 AGGGCGAGCGATGATGTGT-TG--CCCTC-GACGAACCACAGGAGTTCGGCAATGACTGC 414681
Query 30424 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456
||||| | |||||| |||||||||||
Sbjct 414682 GCGGAGGAAGACACGCTTGGTTGTGAGGAGGGG 414714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406310231635128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |