Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 6e-16 >seq6 Length=6290098 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||||| ||| |||||| |||||||| || || || Sbjct 607381 CCACCGCGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 607322 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || |||||||| || || ||||| || |||||||| ||||| || || Sbjct 607321 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 607262 Query 34600 ACTCCCTCCTTGTC 34613 | |||||||| || Sbjct 607261 ATGCCCTCCTTATC 607248 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||| ||||| |||||| |||||||| ||||| || | || || Sbjct 607600 AGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTACGA 607541 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 607540 CCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCC 607481 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||||| | || ||| | ||| |||||| || || || | || Sbjct 607480 TTATCTTGGATCTTC-GACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGT 607422 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | || || || ||||||||||| Sbjct 607421 AATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | |||| |||||| || ||||| || ||||| ||||| Sbjct 607838 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCT 607779 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || || || || | |||||| ||||| || || Sbjct 607778 CAGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGG 607719 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || || || ||| ||||| ||| | Sbjct 607718 AATACCCTCCTTGTCCTGGATC-TTGGACTTCACATTATCAATCGTGTCAGATGACTCGA 607660 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || ||||| || || || | ||| || || || |||||||| Sbjct 607659 CTTCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729469583922