Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 >seq6 Length=6290098 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | ||||| || || || ||| | || Sbjct 607383 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 607442 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || ||||| || || ||||| || ||||| || Sbjct 607443 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCGACCAG 607502 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || || | || || || ||| | || ||||||||| Sbjct 607503 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCGGATTACAAC 607562 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | ||| | || ||||| |||| ||||| || Sbjct 607563 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGTCTGCGTGGTGGTAT 607612 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || || |||||| | || || ||||| || || | || || | || || Sbjct 607167 GTCAAGACGCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 607226 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || ||||| || || || ||||| || || || || |||||||| || Sbjct 607227 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATC 607286 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | || ||||| ||| | || || | ||| | ||||| ||||||||||| |||||| Sbjct 607287 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAG 607346 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | ||||||||| | ||| | || ||||| || Sbjct 607347 TCCACACTCCATTTGGTTCTTCGTCTTCGCGGTGGTAT 607384 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | ||||| | ||||| || | || Sbjct 607611 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCT 607670 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || || || ||||| || || || || || || || Sbjct 607671 GACACGATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 607730 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || ||||||| || || | |||||||||| Sbjct 607731 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGCGATTACAAC 607790 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||| || ||| | ||| |||| | ||| | || || ||| Sbjct 607791 ATCCAGAAGGAATCAACCCTCCATCTGGTCCTCCGTCTTCGTGGCGGC 607838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918215159680