Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq15 104 2e-17 >seq15 Length=3115873 Score = 104 bits (114), Expect = 2e-17 Identities = 195/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 |||||||||| |||||||||||| |||||| |||||||| |||| | | || Sbjct 414339 TGTGGCACGGCGGGAGCGCCATCTTCTTCAGATCCGCTGGGTTCCATGCGCTGAGGAGGA 414398 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 | | | ||| | ||||||| ||| | ||| ||| || | ||| ||||| | | Sbjct 414399 TGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGC 414458 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 |||| |||| || |||| ||| | | || ||||| || |||||||| | ||| ||| Sbjct 414459 CCTGGCCCGTGTAATCCGTCTTGGAGTCGACG-TACTCGGCGCCAAAGTGGCGCCATTGG 414517 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA---ACCCCCGCTTGTCC 6982 || ||||| || ||||| | |||||| | | || | ||||| || ||| |||| Sbjct 414518 AAGCCGTACACGGGGCCGAGGTCGCCGACTT--CGCGGTGGGAGAGGCCGACGC-TGTCG 414574 Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || || || || || |||| ||||||||||||| || || Sbjct 414575 AGGAACTCGCGCGATCCGTTGCCGTCCCAGATCTTGACGCC 414615 Score = 104 bits (114), Expect = 2e-17 Identities = 195/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT---TC 34378 || || ||||||||||||| |||| || || || || || |||| ||| || || Sbjct 414615 GGCGTCAAGATCTGGGACGGCAACGGATCGCGCGAGTTCCTCGACA-GCGTCGGCCTCTC 414557 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 ||| | || | | |||||| | ||||| || ||||| ||||| ||| | |||||||| Sbjct 414556 CCACCGCG--AAGTCGGCGACCTCGGCCCCGTGTACGGCTTCCAATGGCGCCACTTTGGC 414499 Query 34439 GCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTA 34497 || ||||| || | | ||| |||| || |||| ||||| | ||||| ||| | Sbjct 414498 GCCGAGTA-CGTCGACTCCAAGACGGATTACACGGGCCAGGGCGTCGACCAACTGGCCGA 414440 Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557 || ||| ||| | ||| ||||||| | ||| | | ||| | | |||| ||||| Sbjct 414439 GGTCATCCACAAGCTCAAGACGAACCCTTACGACCGCCGCATCCTCCTCAGCGCATGGAA 414380 Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 ||| |||||| |||||||||||| |||||||||| Sbjct 414379 CCCAGCGGATCTGAAGAAGATGGCGCTCCCGCCGTGCCACA 414339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 ||| | ||||| || ||||| || | |||||| | | |||| || | ||||| | Sbjct 414047 AGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGAGCGCGTCCACGTGGTCC 414106 Query 6560 AGGTAGATATGCGCATCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCAACCCCACG 6616 ||||| ||||| || |||| |||| || || || ||| | | | || | |||| Sbjct 414107 GCGTAGACGTGCGCGTCGCCCATGACGT--GCGTGAGGCTTCCCGGTACCAAATCGCACG 414164 Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 | | || ||||||| |||||| || ||||| || ||||||||||| |||||||| | Sbjct 414165 CCC-GCGCAATCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTGAAGGGCACCCCGAGT 414223 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 |||||||| | || || || || | ||||||| Sbjct 414224 CCCATGTCGCAAGACCGCTGGTACAACTGGCAG 414256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||| | || || || || | |||||||| | |||||||| ||||||||||| || Sbjct 414256 CTGCCAGTTGTACCAGCGGTCTTGCGACATGGGACTCGGGGTGCCCTTCAACATTGCCAG 414197 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAG-CTGG 34754 ||||| || |||||| ||||||| || | | |||| | || | | | ||| || || Sbjct 414196 CTACGCGCTCCTCACGCACATGATTGCGC-GGGCGTGCGATTTGGTACCGGGAAGCCTCA 414138 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || |||| |||| || ||||| ||||| | ||||| | || |||| | | || Sbjct 414137 CGC--ACGTCATGGGCGACGCGCACGTCTACGCGGACCACGTGGACGCGCTCAAGGTGCA 414080 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 |||| | || ||||| || ||||| | ||| Sbjct 414079 GCTGGAGCGGGAGCCGAGAGACTTCCCGCTGCT 414047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262209488480