Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq15 104 2e-17
>seq15
Length=3115873
Score = 104 bits (114), Expect = 2e-17
Identities = 195/281 (69%), Gaps = 8/281 (3%)
Strand=Plus/Plus
Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806
|||||||||| |||||||||||| |||||| |||||||| |||| | | ||
Sbjct 414339 TGTGGCACGGCGGGAGCGCCATCTTCTTCAGATCCGCTGGGTTCCATGCGCTGAGGAGGA 414398
Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866
| | | ||| | ||||||| ||| | ||| ||| || | ||| ||||| | |
Sbjct 414399 TGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGC 414458
Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925
|||| |||| || |||| ||| | | || ||||| || |||||||| | ||| |||
Sbjct 414459 CCTGGCCCGTGTAATCCGTCTTGGAGTCGACG-TACTCGGCGCCAAAGTGGCGCCATTGG 414517
Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA---ACCCCCGCTTGTCC 6982
|| ||||| || ||||| | |||||| | | || | ||||| || ||| ||||
Sbjct 414518 AAGCCGTACACGGGGCCGAGGTCGCCGACTT--CGCGGTGGGAGAGGCCGACGC-TGTCG 414574
Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
|| || || || || |||| ||||||||||||| || ||
Sbjct 414575 AGGAACTCGCGCGATCCGTTGCCGTCCCAGATCTTGACGCC 414615
Score = 104 bits (114), Expect = 2e-17
Identities = 195/281 (69%), Gaps = 8/281 (3%)
Strand=Plus/Minus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT---TC 34378
|| || ||||||||||||| |||| || || || || || |||| ||| || ||
Sbjct 414615 GGCGTCAAGATCTGGGACGGCAACGGATCGCGCGAGTTCCTCGACA-GCGTCGGCCTCTC 414557
Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438
||| | || | | |||||| | ||||| || ||||| ||||| ||| | ||||||||
Sbjct 414556 CCACCGCG--AAGTCGGCGACCTCGGCCCCGTGTACGGCTTCCAATGGCGCCACTTTGGC 414499
Query 34439 GCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTA 34497
|| ||||| || | | ||| |||| || |||| ||||| | ||||| ||| |
Sbjct 414498 GCCGAGTA-CGTCGACTCCAAGACGGATTACACGGGCCAGGGCGTCGACCAACTGGCCGA 414440
Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557
|| ||| ||| | ||| ||||||| | ||| | | ||| | | |||| |||||
Sbjct 414439 GGTCATCCACAAGCTCAAGACGAACCCTTACGACCGCCGCATCCTCCTCAGCGCATGGAA 414380
Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598
||| |||||| |||||||||||| ||||||||||
Sbjct 414379 CCCAGCGGATCTGAAGAAGATGGCGCTCCCGCCGTGCCACA 414339
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559
||| | ||||| || ||||| || | |||||| | | |||| || | ||||| |
Sbjct 414047 AGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGAGCGCGTCCACGTGGTCC 414106
Query 6560 AGGTAGATATGCGCATCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCAACCCCACG 6616
||||| ||||| || |||| |||| || || || ||| | | | || | ||||
Sbjct 414107 GCGTAGACGTGCGCGTCGCCCATGACGT--GCGTGAGGCTTCCCGGTACCAAATCGCACG 414164
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
| | || ||||||| |||||| || ||||| || ||||||||||| |||||||| |
Sbjct 414165 CCC-GCGCAATCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTGAAGGGCACCCCGAGT 414223
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
|||||||| | || || || || | |||||||
Sbjct 414224 CCCATGTCGCAAGACCGCTGGTACAACTGGCAG 414256
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
||||||| | || || || || | |||||||| | |||||||| ||||||||||| ||
Sbjct 414256 CTGCCAGTTGTACCAGCGGTCTTGCGACATGGGACTCGGGGTGCCCTTCAACATTGCCAG 414197
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAG-CTGG 34754
||||| || |||||| ||||||| || | | |||| | || | | | ||| || ||
Sbjct 414196 CTACGCGCTCCTCACGCACATGATTGCGC-GGGCGTGCGATTTGGTACCGGGAAGCCTCA 414138
Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812
|| |||| |||| || ||||| ||||| | ||||| | || |||| | | ||
Sbjct 414137 CGC--ACGTCATGGGCGACGCGCACGTCTACGCGGACCACGTGGACGCGCTCAAGGTGCA 414080
Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845
|||| | || ||||| || ||||| | |||
Sbjct 414079 GCTGGAGCGGGAGCCGAGAGACTTCCCGCTGCT 414047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448262209488480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |