Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq10 161 2e-34
seq6 161 2e-34
seq14 134 3e-26
>seq10
Length=4416304
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | || ||
Sbjct 3556421 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3556480
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| ||||| || ||||| || |||| || |||||||||
Sbjct 3556481 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 3556540
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 3556541 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 3556600
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| || || | ||||||
Sbjct 3556601 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632
>seq6
Length=6290098
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || ||||| ||||| || || ||||| ||||||| | ||| | |||||
Sbjct 607594 AGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTACGACCATCC 607535
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| | ||| || ||||| ||||||| || ||||| ||
Sbjct 607534 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCT 607475
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || |||||||| || |||||||||||| || ||||||
Sbjct 607474 TGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTC 607415
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 607414 TTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || || || || || || |||||||| ||||| || ||
Sbjct 607832 ACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGT 607773
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||||||||||||||| || ||||||||||| || || |||||||| |||| ||
Sbjct 607772 GCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACC 607713
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| ||||| || || || |||||||| || || || |
Sbjct 607712 CTCCTTGTCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAA 607653
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||||||||| || || ||||| || || | ||||||
Sbjct 607652 TGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611
Score = 145 bits (160), Expect = 2e-29
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| ||||| ||||| || |||||||| || || | |||||
Sbjct 607090 ACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 607031
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| ||||| || || || || || || || |||| ||
Sbjct 607030 GCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCC 606971
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| |||||||| || ||||| || ||| || ||||||||
Sbjct 606970 CTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTCGACCTCGAG 606911
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
|||||| ||||| || ||||
Sbjct 606910 AGTGATGGTCTTGCCGGTGA 606891
Score = 95.1 bits (104), Expect = 3e-14
Identities = 183/270 (68%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145
|||| | |||||| ||||||||||| | | ||||| ||||| ||||||||
Sbjct 2839151 TTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGT 2839210
Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205
| || ||| | |||||| |||| ||| || |||||||| |||||| || ||||
Sbjct 2839211 TGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGTCT 2839270
Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265
| | || || || ||||||||| | ||| | ||||||| ||| ||||||
Sbjct 2839271 TGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGC 2839330
Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325
||| | || || || |||||||||||| | ||| |||| | ||| | || |
Sbjct 2839331 AGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGA 2839390
Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGA 178355
||| |||||||| || || | | ||||||
Sbjct 2839391 CTCTCTTCATGAACAGATCGGGGATCCAGA 2839420
>seq14
Length=3529981
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | ||||| || ||||||||||| ||||||||
Sbjct 714226 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 714167
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
||||| || |||||||| || | || ||||||||||||||||| || || || |||
Sbjct 714166 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 714107
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 714106 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 714048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151495044410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |