Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10 161 2e-34 seq6 161 2e-34 seq14 134 3e-26 >seq10 Length=4416304 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 3556421 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3556480 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| || ||||| || |||| || ||||||||| Sbjct 3556481 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 3556540 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 3556541 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 3556600 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 3556601 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632 >seq6 Length=6290098 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||| ||||| || || ||||| ||||||| | ||| | ||||| Sbjct 607594 AGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTACGACCATCC 607535 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||| || ||||| ||||||| || ||||| || Sbjct 607534 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCT 607475 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| || |||||||||||| || |||||| Sbjct 607474 TGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTC 607415 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 607414 TTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || || || || || || |||||||| ||||| || || Sbjct 607832 ACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGT 607773 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || ||||||||||| || || |||||||| |||| || Sbjct 607772 GCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACC 607713 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| ||||| || || || |||||||| || || || | Sbjct 607712 CTCCTTGTCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAA 607653 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| || || ||||| || || | |||||| Sbjct 607652 TGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| ||||| || |||||||| || || | ||||| Sbjct 607090 ACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 607031 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| ||||| || || || || || || || |||| || Sbjct 607030 GCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCC 606971 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| |||||||| || ||||| || ||| || |||||||| Sbjct 606970 CTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTCGACCTCGAG 606911 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 |||||| ||||| || |||| Sbjct 606910 AGTGATGGTCTTGCCGGTGA 606891 Score = 95.1 bits (104), Expect = 3e-14 Identities = 183/270 (68%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145 |||| | |||||| ||||||||||| | | ||||| ||||| |||||||| Sbjct 2839151 TTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGT 2839210 Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205 | || ||| | |||||| |||| ||| || |||||||| |||||| || |||| Sbjct 2839211 TGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGTCT 2839270 Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265 | | || || || ||||||||| | ||| | ||||||| ||| |||||| Sbjct 2839271 TGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGC 2839330 Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325 ||| | || || || |||||||||||| | ||| |||| | ||| | || | Sbjct 2839331 AGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGA 2839390 Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGA 178355 ||| |||||||| || || | | |||||| Sbjct 2839391 CTCTCTTCATGAACAGATCGGGGATCCAGA 2839420 >seq14 Length=3529981 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 714226 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 714167 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| || | || ||||||||||||||||| || || || ||| Sbjct 714166 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 714107 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || || || ||||| ||||| || ||||| || || Sbjct 714106 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 714048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151495044410