Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10 120 7e-22 seq6 120 7e-22 seq14 89.7 1e-12 >seq10 Length=4416304 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | || || Sbjct 3556421 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3556480 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || | ||||||||| | | || || ||||| | Sbjct 3556481 TCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGT 3556538 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | |||| || ||| || ||||| || |||| Sbjct 3556539 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAG 3556598 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || ||||| ||||||| |||||| Sbjct 3556599 TCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632 >seq6 Length=6290098 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| ||||| ||||| || || ||||||||||| | || || | ||||| Sbjct 607594 AGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTACGACCATCC 607535 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| | | ||||||||| | | || || ||||| | Sbjct 607534 TCAAGCTGCTTT--CCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTAT 607477 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || ||||| | || | | |||||||| || || || || ||||| | Sbjct 607476 CTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCG 607417 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || ||||| ||||| | |||||| Sbjct 607416 TCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383 Score = 113 bits (124), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || || || || || ||||||||||||||| | ||| | ||||| Sbjct 607823 GAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATC 607764 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| || ||||| || ||||||||||| | ||||||||| | | || || ||||| Sbjct 607763 TTCCAGCTGCTTT--CCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 607706 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || || ||| | || | |||| || ||| ||||| | ||||| Sbjct 607705 TCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACTTCCAATGTAATC 607646 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| ||||||| |||||| Sbjct 607645 GTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611 >seq14 Length=3529981 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | ||||| || || || || |||||||| Sbjct 714226 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 714167 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | | ||| || ||||| || || || || |||||| | || Sbjct 714166 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 714107 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||| || ||| || ||||| ||||| || || ||||| || ||||||||||| Sbjct 714106 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 714048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820297366814