Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq10 172 1e-37 seq6 158 3e-33 seq14 138 2e-27 >seq10 Length=4416304 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 3556405 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3556464 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| || || ||||| || Sbjct 3556465 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 3556524 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| ||||| || | || || Sbjct 3556525 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 3556584 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 3556585 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632 >seq6 Length=6290098 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||||||||| || || || ||||| | || || || || |||||||| || | Sbjct 607610 ACCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGA 607551 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || || |||||||| || || || ||||| |||||||| || || ||||| | Sbjct 607550 CAAG-GTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAG 607492 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| |||||||| ||||||||||| | || ||| | || || ||||| |||| ||| | Sbjct 607491 GAATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAA 607432 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| || |||||||| || || | ||||| ||||| |||||||| Sbjct 607431 CCTCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||||||| | || ||| || ||||||||||| || Sbjct 607837 CCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTC 607778 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || || ||||| | ||| || |||||| ||| Sbjct 607777 AGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGA 607718 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || || |||| || ||||| || | |||||| Sbjct 607717 ATACCCTCCTTGTCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACT 607658 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || |||||||| || |||| ||||| ||||| |||||||| Sbjct 607657 TCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| |||| ||| | ||| || || || ||||||||||| | Sbjct 607382 ACCACCGCGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGA 607323 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| ||||| || || |||||||||||||| || |||||| || Sbjct 607322 CAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGG 607263 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||| | || || | ||||| || || |||| ||||| Sbjct 607262 GATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGAC 607203 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || || ||||| ||||| || || | ||||| |||| Sbjct 607202 CTCAAGGGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 607165 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | || || || |||||||||||||| | Sbjct 607096 ACCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 607037 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || || || | ||| || || || || Sbjct 607036 GAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGG 606977 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| |||| || || || || | ||||| Sbjct 606976 AATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTCGAC 606917 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||||||||| ||||| || || Sbjct 606916 CTCGAGAGTGATGGTCTTGCCGGT 606893 >seq14 Length=3529981 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || || || |||||| Sbjct 714226 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 714167 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || |||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 714166 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 714107 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || || || ||||||||||||| ||||| ||||| Sbjct 714106 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 714048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738744014236