Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6 150 4e-31
seq10 138 3e-27
>seq6
Length=6290098
Score = 150 bits (166), Expect = 4e-31
Identities = 159/207 (77%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || || ||||| || ||||| || |||||||| ||| ||||||
Sbjct 607386 CAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAATCTTCAGAC 607445
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| || || || || || || ||||| ||||||||
Sbjct 607446 ACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCGACCAGCAG 607505
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | |||||||||||||| ||||| || ||||| | || |||| | ||||| ||| |
Sbjct 607506 CGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTAC-CTTGTCGGATTACAACAT 607564
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| |||||||| ||
Sbjct 607565 TCAGAAGGAGTCAACTCTGCATCTCGT 607591
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || ||||| ||||| || | || || || || |||
Sbjct 607614 CAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCTGAC 607673
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| |||||||| || || || || || ||||||||
Sbjct 607674 ACGATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAGCAG 607733
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| ||||| ||||| |||||||| | ||||| |||||| ||| ||
Sbjct 607734 CGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGCGATTACAACATC 607793
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || |||||||| || ||||| ||
Sbjct 607794 CAGAAGGAATCAACCCTCCATCTGGT 607819
Score = 113 bits (124), Expect = 1e-19
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || |||||||| ||||| || || || |||||||
Sbjct 607165 TCGTCAAGACGCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 607224
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| ||||||||||| || || || ||||| || |||||||| || | |
Sbjct 607225 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGA 607284
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || || || || || || ||||| | || || |||| || ||| | || || |
Sbjct 607285 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 607344
Query 178111 AATCAACACTGCATCTTGTT 178130
| || ||||| ||| | |||
Sbjct 607345 AGTCCACACTCCATTTGGTT 607364
>seq10
Length=4416304
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || |||||||| |||||||| || |||
Sbjct 3556629 CAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGAC 3556570
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || || || || ||||||||
Sbjct 3556569 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 3556510
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||||||||| |||||||| || || | || || |||| || ||| ||
Sbjct 3556509 CGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 3556450
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 3556449 CAGAAGGAGTCCACCCTCCACCTGGT 3556424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730675624596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |