Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 150 4e-31 seq10 138 3e-27 >seq6 Length=6290098 Score = 150 bits (166), Expect = 4e-31 Identities = 159/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || ||||| || ||||| || |||||||| ||| |||||| Sbjct 607386 CAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAATCTTCAGAC 607445 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || || || || || || ||||| |||||||| Sbjct 607446 ACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCGACCAGCAG 607505 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||||||||| ||||| || ||||| | || |||| | ||||| ||| | Sbjct 607506 CGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTAC-CTTGTCGGATTACAACAT 607564 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| |||||||| || Sbjct 607565 TCAGAAGGAGTCAACTCTGCATCTCGT 607591 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| ||||| || | || || || || ||| Sbjct 607614 CAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCTGAC 607673 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| |||||||| || || || || || |||||||| Sbjct 607674 ACGATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAGCAG 607733 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| ||||| |||||||| | ||||| |||||| ||| || Sbjct 607734 CGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGCGATTACAACATC 607793 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || |||||||| || ||||| || Sbjct 607794 CAGAAGGAATCAACCCTCCATCTGGT 607819 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || |||||||| ||||| || || || ||||||| Sbjct 607165 TCGTCAAGACGCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 607224 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||||||||| || || || ||||| || |||||||| || | | Sbjct 607225 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGA 607284 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || || || || ||||| | || || |||| || ||| | || || | Sbjct 607285 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 607344 Query 178111 AATCAACACTGCATCTTGTT 178130 | || ||||| ||| | ||| Sbjct 607345 AGTCCACACTCCATTTGGTT 607364 >seq10 Length=4416304 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 3556629 CAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGAC 3556570 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || || || |||||||| Sbjct 3556569 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 3556510 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| |||||||| || || | || || |||| || ||| || Sbjct 3556509 CGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 3556450 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 3556449 CAGAAGGAGTCCACCCTCCACCTGGT 3556424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730675624596