Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq10 179 3e-40
seq14 138 1e-27
seq6 127 2e-24
seq13 86.0 6e-12
>seq10
Length=4416304
Score = 179 bits (198), Expect = 3e-40
Identities = 179/230 (78%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| |||||||||
Sbjct 3556406 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3556465
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| |||||||| ||||||||||| ||||| | ||||
Sbjct 3556466 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 3556525
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | |||||| ||||||||
Sbjct 3556526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACTCCA 3556583
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || |||||||| ||||| ||||| |||||||||
Sbjct 3556584 CCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 3556633
>seq14
Length=3529981
Score = 138 bits (152), Expect = 1e-27
Identities = 147/191 (77%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||||||||| | || || ||||||||||| ||||| |
Sbjct 714228 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 714169
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||||||||| ||||| | ||| | || |||||||||| ||| || ||| || |
Sbjct 714168 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 714109
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | |||||| ||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 714108 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 714051
Query 41851 GAAAATCTGCA 41861
|||| |||||
Sbjct 714050 GAAA--CTGCA 714042
>seq6
Length=6290098
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | |||||||| || || |||||||| ||||| || |||
Sbjct 607838 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCT 607779
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || |||||||| || ||||| || || ||||| ||||| | |||
Sbjct 607778 CAGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGG 607719
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCA 41813
|| | |||||||||| ||| || ||||| | | | | ||||| ||||| |
Sbjct 607718 AATACCCTCCTTGTCCTGGATCTTGGACTTCACATTATCAATC-GTGTCAGATGACTCGA 607660
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| |||| || ||||| || || ||||||||||| ||||| ||||||||
Sbjct 607659 CTTCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || |||||||| || ||||||||||||||| || || ||
Sbjct 607609 CCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 607550
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || |||||||| |||||||| |||| |||||| ||||| | |||
Sbjct 607549 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 607490
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||| || ||| || ||| ||| | | | ||||| || || ||
Sbjct 607489 ATGCCCTCCTTATCTTGGATCTTCGACTT-GACGTTGTCAATGGTGTCTGAAGATTCAAC 607431
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | ||| ||||| || || || || ||||| ||||||||||||||
Sbjct 607430 CTCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 114 bits (126), Expect = 1e-20
Identities = 160/220 (73%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | |||| ||| || ||| ||||||||||||||| ||||||||
Sbjct 607381 CCACCGCGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 607322
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || || |||||||| || || |||| ||||| ||||| | |||
Sbjct 607321 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 607262
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || |||||| ||| ||| | || | ||| || | || | || || |||||
Sbjct 607261 ATGCCCTCCTTATCC-TGAATCTTCGACTTGACATTGTCG--ATGGTATCAGAAGACTCG 607205
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||||| | || || || || || || |||||||| ||||
Sbjct 607204 ACCTCAAGGGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 607165
Score = 111 bits (122), Expect = 1e-19
Identities = 94/116 (81%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||||||||||||||| |||| || ||||||||||| |||||
Sbjct 607060 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 607001
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786
|| || ||||| || || | ||||| || |||||||||| ||| || |||||
Sbjct 607000 AATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCA 606945
>seq13
Length=3673828
Score = 86.0 bits (94), Expect = 6e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 85806 GCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCGAC 85865
|| || || || ||||||||| |||| || |||||| |||||||| ||||||||
Sbjct 1523526 GCTCCCCGCTCTGGCCTCGCCTCCAAGAACTTCATCGACACCGGCGCCGGCGTCATCGAT 1523585
Query 85866 GCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||| | |||| || | ||||||||||||| |||
Sbjct 1523586 GCCGACTACCGCGGCCAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 1523632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303803520800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |