Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1802 118 2e-21 >seq1802 Length=45256 Score = 118 bits (130), Expect = 2e-21 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTT-ATGG 230473 |||||| | ||| ||| | || || ||| ||| | ||||||||| | ||||| ||| Sbjct 28855 GAGTTCCTGACTGAGGCTCTGCCCTG-CGCTCTTCTCGGCATGAACTCC-AACTTGATGA 28798 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 ||||||||||| ||||| || |||||| || | || || ||||| |||| || || | Sbjct 28797 AGCAGTACATCGAGTTCGTTGCTGACCGCCTTCTGGTCGCTCTTGGCAACGACAAGGTCT 28738 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 |||| ||| |||||||| | || |||||| ||| || ||| || |||||||||| Sbjct 28737 ACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 28678 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634 |||| || ||||||||| || || || | | | |||||| Sbjct 28677 TCTTTGAGAAGCGTGTCGCCGATTACCAAAAGGCCGGTGTG 28637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057788571490820