Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 118 2e-21
>seq1802
Length=45256
Score = 118 bits (130), Expect = 2e-21
Identities = 162/221 (73%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTT-ATGG 230473
|||||| | ||| ||| | || || ||| ||| | ||||||||| | ||||| |||
Sbjct 28855 GAGTTCCTGACTGAGGCTCTGCCCTG-CGCTCTTCTCGGCATGAACTCC-AACTTGATGA 28798
Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533
||||||||||| ||||| || |||||| || | || || ||||| |||| || || |
Sbjct 28797 AGCAGTACATCGAGTTCGTTGCTGACCGCCTTCTGGTCGCTCTTGGCAACGACAAGGTCT 28738
Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593
|||| ||| |||||||| | || |||||| ||| || ||| || ||||||||||
Sbjct 28737 ACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 28678
Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634
|||| || ||||||||| || || || | | | ||||||
Sbjct 28677 TCTTTGAGAAGCGTGTCGCCGATTACCAAAAGGCCGGTGTG 28637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057788571490820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |