Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 96.9 4e-15
>seq1802
Length=45256
Score = 96.9 bits (106), Expect = 4e-15
Identities = 195/287 (68%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || ||||||||||| ||| ||| | || ||||| ||||||||||| |||||
Sbjct 29660 ATGTAGGTATCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGG 29719
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| ||||| || || || | | || || || || |||| || || | ||
Sbjct 29720 AAGCCGTAGAAGCAGCGAGCCTCGGGGACCTGGACCTCGCCGGAGAAGCGCTCAACGAGG 29779
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| ||||| ||||| || || ||||||||| || || | || || ||||| ||
Sbjct 29780 TTCTCGTTGACGATACCATCCGACGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTAC 29839
Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470
|| || || || || | | |||||| | | ||| ||||| | ||| | ||
Sbjct 29840 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCC 29899
Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
|||| |||||| || |||| | ||||| || ||||| | ||| ||
Sbjct 29900 TCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 29946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517528689197520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |