Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq719 156 5e-33 >seq719 Length=48969 Score = 156 bits (172), Expect = 5e-33 Identities = 461/704 (65%), Gaps = 14/704 (2%) Strand=Plus/Plus Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035 |||| ||||| || |||| || ||||| | | ||| || ||| | || |||| | Sbjct 16924 CCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCT 16983 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 54095 |||| || ||||| || ||||| ||||| | || ||||| | | | ||||| | Sbjct 16984 TCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCGCGAGCACGGACCTCCTCCT 17043 Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155 | || ||||| | || | |||| | | | ||| | ||||| || || | || Sbjct 17044 TGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGT 17103 Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 | |||| | | ||||| || ||||| || ||||| || | ||| | ||| ||||| | Sbjct 17104 AAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGT 17163 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 | | || | | ||| ||||| | ||| || |||| ||| ||||| |||| || ||| Sbjct 17164 TGAAGACACGAAGCATGGGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGG 17223 Query 54276 TTCCACTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATT 54334 ||| | ||||| ||| | | | | ||||| || || || ||||| || ||||| Sbjct 17224 AGCCAGTAGCACGGATACGG-TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATC 17282 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | ||||| || | || || || || ||||| ||| || ||| |||||| | Sbjct 17283 ATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACG 17342 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || || ||||| ||| || || || || || || | || || || ||| Sbjct 17343 AGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCG 17402 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATA----GCT-GAGTCTAT-A 54508 || || || | || || | || ||||| |||||||| ||| || ||| | Sbjct 17403 TGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACACGCTCGACGTTATCA 17462 Query 54509 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 54568 |||| |||| || ||||| |||||||| | ||||||||||||||| || | ||| Sbjct 17463 CCCCA--GATG----CCGACTGCAACACGCATGATCATGTGCTGAGGTCTCTCGGCAATC 17516 Query 54569 TTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 54628 ||| || | || |||| ||| ||| | ||||| || || || || || || | ||| Sbjct 17517 TTGCCGTCAAGCTTAAGCAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAG 17576 Query 54629 GAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 ||||| || ||||| | ||| | |||| ||| | ||||| Sbjct 17577 TTGAAGTCGCGGTCGTAGACAATGGCAGAGTCGAGCTCTTCCTT 17620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593702200146720