Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq719 156 5e-33
>seq719
Length=48969
Score = 156 bits (172), Expect = 5e-33
Identities = 461/704 (65%), Gaps = 14/704 (2%)
Strand=Plus/Plus
Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035
|||| ||||| || |||| || ||||| | | ||| || ||| | || |||| |
Sbjct 16924 CCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCT 16983
Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 54095
|||| || ||||| || ||||| ||||| | || ||||| | | | ||||| |
Sbjct 16984 TCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCGCGAGCACGGACCTCCTCCT 17043
Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155
| || ||||| | || | |||| | | | ||| | ||||| || || | ||
Sbjct 17044 TGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGT 17103
Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215
| |||| | | ||||| || ||||| || ||||| || | ||| | ||| ||||| |
Sbjct 17104 AAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGT 17163
Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275
| | || | | ||| ||||| | ||| || |||| ||| ||||| |||| || |||
Sbjct 17164 TGAAGACACGAAGCATGGGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGG 17223
Query 54276 TTCCACTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATT 54334
||| | ||||| ||| | | | | ||||| || || || ||||| || |||||
Sbjct 17224 AGCCAGTAGCACGGATACGG-TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATC 17282
Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394
| ||||| || | || || || || ||||| ||| || ||| |||||| |
Sbjct 17283 ATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACG 17342
Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454
|| || || ||||| ||| || || || || || || | || || || |||
Sbjct 17343 AGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCG 17402
Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATA----GCT-GAGTCTAT-A 54508
|| || || | || || | || ||||| |||||||| ||| || ||| |
Sbjct 17403 TGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACACGCTCGACGTTATCA 17462
Query 54509 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 54568
|||| |||| || ||||| |||||||| | ||||||||||||||| || | |||
Sbjct 17463 CCCCA--GATG----CCGACTGCAACACGCATGATCATGTGCTGAGGTCTCTCGGCAATC 17516
Query 54569 TTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 54628
||| || | || |||| ||| ||| | ||||| || || || || || || | |||
Sbjct 17517 TTGCCGTCAAGCTTAAGCAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAG 17576
Query 54629 GAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672
||||| || ||||| | ||| | |||| ||| | |||||
Sbjct 17577 TTGAAGTCGCGGTCGTAGACAATGGCAGAGTCGAGCTCTTCCTT 17620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593702200146720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |