Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1593 183 4e-41 >seq1593 Length=35623 Score = 183 bits (202), Expect = 4e-41 Identities = 368/550 (67%), Gaps = 67/550 (12%) Strand=Plus/Plus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 || || | ||| || | |||||||||| ||||||||||||||| |||| |||||| Sbjct 938 AGTTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGC 997 Query 145732 ATGAAG-TCCCCGG-----GCTCG-AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAG 145784 ||| | | ||||| | ||| | ||||| | | | ||||| ||||| || Sbjct 998 GTGAGGCTTCCCGGTACCAGATCGCACGCCCGCG-------CAATCATGTGTGTCAGGAG 1050 Query 145785 GGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAG 145844 | ||||||||| ||||||||||| || || || |||||||| | || ||||||||||| Sbjct 1051 CGCGTAGCTGGCAATGTTGAAGGGTACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAG 1110 Query 145845 CTGGCAGGAGAGCT--CCC----------------------------CGCC--------- 145865 |||||| ||| | ||| |||| Sbjct 1111 CTGGCAATGGAGGTGGCCCTTTGGCTTCTCCTCATTTGCGAGCGTTGCGCCGCGGGCTCG 1170 Query 145866 ------CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCA 145918 || ||||| ||||| ||| | | |||||| ||||| || ||||| || Sbjct 1171 CGGGTACGAGACGTAAAACTGCGCAAAC-ATGTGGCACGGCGGGAGCGCCATCTTCTTCA 1229 Query 145919 GGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGA 145975 ||||||| || ||||| ||| |||||| || | | || ||| |||||| |||||| Sbjct 1230 GGTCCGCTGGATTCCACGCGCTGAGGAGGA---TGCGGCGGTCGTAAGGGTTCGTCTTGA 1286 Query 145976 TCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGT 146035 || || | || || ||||| |||||||| ||| |||||| |||||||||| Sbjct 1287 GCTTGTGGATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGT 1346 Query 146036 CCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGG 146095 | |||||| |||| || ||||| | ||| ||||| ||||| ||||| || ||||| ||| Sbjct 1347 CGACGTACTCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGA 1406 Query 146096 GCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGA 146155 || | ||| || ||| | | | ||||||| || || || |||||| ||||||||| Sbjct 1407 CTTCGCGGTGTGAGAGGCCGACGCTGTCGAGGAACTCGCGCGATCCGTTGCCGTCCCAGA 1466 Query 146156 TCTTGACGCC 146165 |||||||||| Sbjct 1467 TCTTGACGCC 1476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590057519240560