Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 168 7e-37
seq1284 143 3e-29
seq1474 127 2e-24
>seq1802
Length=45256
Score = 168 bits (186), Expect = 7e-37
Identities = 211/286 (74%), Gaps = 5/286 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| ||||||| | || ||
Sbjct 29946 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 29887
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | | || |||| | ||| | ||||||
Sbjct 29886 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTC 29828
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || ||||| |||||||| || || |||||||||||||| || || |||||
Sbjct 29827 TCACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 29768
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | ||||| ||||| ||||||| || |||||||||||||| |||||| ||
Sbjct 29767 CTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 29708
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | ||||| || | || || ||||||||| || |||
Sbjct 29707 GGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGATACCTAC 29662
Score = 109 bits (120), Expect = 6e-19
Identities = 87/105 (83%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 117085 TTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAA 117144
||| ||| |||| || ||||||||||| || || ||||||||||| ||||| ||| |||
Sbjct 29237 TTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAA 29178
Query 117145 CGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189
||||||||||||| | || ||||| ||||| ||||||||||||
Sbjct 29177 CGAGCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGCCTG 29133
>seq1284
Length=15898
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || |||||||| || |||||| | || || || | ||
Sbjct 6050 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 6109
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 6110 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6169
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || || ||||| || |||| |||||||| ||||||||||
Sbjct 6170 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 6229
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| || || || || ||||| || | || ||
Sbjct 6230 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 6276
>seq1474
Length=13610
Score = 127 bits (140), Expect = 2e-24
Identities = 139/182 (76%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| ||||| || |||| | | | | |||| |||||
Sbjct 7159 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGATACCATCGACAACG-TCAAG 7101
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| |||| ||||| ||||| || ||| | |||||||| || ||||| | ||| |||
Sbjct 7100 TCCAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGC 7041
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || |||| |||||||| ||| |||||||||||||||||| | || ||
Sbjct 7040 AAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCTACCCTT 6981
Query 40891 CA 40892
||
Sbjct 6980 CA 6979
Score = 111 bits (122), Expect = 2e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||| | || ||||| || || || | || ||||| | |
Sbjct 6439 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACGATTACGTTGGAAGTCGAGTCATCT 6380
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| | ||| || |||| || || ||||| || || | |||||
Sbjct 6379 GACACGATTGATAACG-TGAAGTCCAAGATTCAGGATAAGGAGGGTATTCCTCCCGACCA 6321
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| || || ||| |||| |||| || ||||| | |||||| ||
Sbjct 6320 GCAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGACGGTCGTACCCTGAGCGACTATAA 6261
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || |||||||| ||
Sbjct 6260 CATCCAGAAGGAGTCAACCCTGCATCTCGT 6231
Score = 109 bits (120), Expect = 6e-19
Identities = 140/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || |||||||| ||||| |||||||| |||| ||||| | | || | |
Sbjct 6885 TCGTCAAGACGCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCTTCTGATACTATCG 6826
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || |||| || || |||||||| ||| | |||||||| || | |
Sbjct 6825 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGA 6766
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| || ||||| || || || |||| ||||||||| |||||||||||| |||||||
Sbjct 6765 TCTTTGCTGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGG 6706
Query 40880 AGGCCACGCTGCA 40892
|| | || || ||
Sbjct 6705 AGTCTACCCTCCA 6693
Score = 98.7 bits (108), Expect = 1e-15
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || || ||||| || || || |||| || ||| | |
Sbjct 6667 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 6608
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| || || | ||||| ||||| || || | |||||
Sbjct 6607 GACACCATTGACAACGTT-AAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCA 6549
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| || || ||||| || || | ||||| | ||||||||
Sbjct 6548 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAA 6489
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||| ||||||||| | || |||||||| || ||||
Sbjct 6488 CATTCAGAAGGAGTCAACCCTGCATCTCGTCCTGCG 6453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515202365212640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |