Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1474 131 1e-25 seq1284 127 2e-24 >seq1474 Length=13610 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || || |||||| |||||| ||||| ||||| Sbjct 6471 GTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACCATCCTCAAGCTGCTTTCCG 6530 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| |||||||| || |||||||||||| || || ||| Sbjct 6531 GCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTA 6590 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | || ||||||| || | ||| ||||| || |||||| Sbjct 6591 ACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCAGTAAGAGTT 6650 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 6651 TTGACGAAAATCTGCAT 6667 Score = 122 bits (134), Expect = 8e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || || |||||||||||| | ||||| ||||| Sbjct 6973 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCA 7032 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | |||||||||||||| ||||| || || ||||||||||| | Sbjct 7033 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGA 7092 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | ||||||||||| ||| | || ||| Sbjct 7093 ATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 7152 Query 118710 CCGGT 118714 ||||| Sbjct 7153 CCGGT 7157 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || ||||||| || || || || | ||| |||||| Sbjct 6243 GTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTCTTCCAACTGCTTTCCA 6302 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| |||||||| || |||||||| || ||| || || Sbjct 6303 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGAATCTTGGACTTC 6362 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | |||||| || | || | ||| ||||| |||| || Sbjct 6363 ACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTGCCAGTCAACGTC 6422 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 6423 TTGACGAAGATCTGCAT 6439 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||||| || ||||||||||| ||| | ||||| ||||| Sbjct 6687 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 6746 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||| | ||||||||| || || || ||||||||||| || | Sbjct 6747 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGA 6806 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || || | ||||||||||| || | || ||| Sbjct 6807 ATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACCTCGAGAGTGATGGTCTTG 6866 Query 118710 CCGGTCAGAGTTTTTAC 118726 || || || || || || Sbjct 6867 CCAGTGAGCGTCTTGAC 6883 >seq1284 Length=15898 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| || ||||| |||||| Sbjct 6258 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 6199 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| || |||||||| ||||| || |||||||||||||| Sbjct 6198 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 6139 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || ||| Sbjct 6138 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 6079 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 6078 CCCGTCAGGGTCTTGACGAAGATCTGCATG 6049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433816578976888