Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 131 1e-25
seq1284 127 2e-24
>seq1474
Length=13610
Score = 131 bits (144), Expect = 1e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||||||||| || || |||||| |||||| ||||| |||||
Sbjct 6471 GTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACCATCCTCAAGCTGCTTTCCG 6530
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||| |||||||| || |||||||||||| || || |||
Sbjct 6531 GCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTA 6590
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | |||||| | || ||||||| || | ||| ||||| || ||||||
Sbjct 6591 ACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCAGTAAGAGTT 6650
Query 118722 TTTACAAAAATCTGCAT 118738
|| || |||||||||||
Sbjct 6651 TTGACGAAAATCTGCAT 6667
Score = 122 bits (134), Expect = 8e-23
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | |||||||| || || |||||||||||| | ||||| |||||
Sbjct 6973 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCA 7032
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| | |||||||||||||| ||||| || || ||||||||||| |
Sbjct 7033 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGA 7092
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | | ||||||||||| ||| | || |||
Sbjct 7093 ATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 7152
Query 118710 CCGGT 118714
|||||
Sbjct 7153 CCGGT 7157
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || ||||| || ||||||| || || || || | ||| ||||||
Sbjct 6243 GTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTCTTCCAACTGCTTTCCA 6302
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| ||||||||||| |||||||| || |||||||| || ||| || ||
Sbjct 6303 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGAATCTTGGACTTC 6362
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||| | |||||| || | || | ||| ||||| |||| ||
Sbjct 6363 ACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTGCCAGTCAACGTC 6422
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 6423 TTGACGAAGATCTGCAT 6439
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| |||||||| || ||||||||||| ||| | ||||| |||||
Sbjct 6687 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 6746
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || ||||| |||| | ||||||||| || || || ||||||||||| || |
Sbjct 6747 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGA 6806
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| || || | ||||||||||| || | || |||
Sbjct 6807 ATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACCTCGAGAGTGATGGTCTTG 6866
Query 118710 CCGGTCAGAGTTTTTAC 118726
|| || || || || ||
Sbjct 6867 CCAGTGAGCGTCTTGAC 6883
>seq1284
Length=15898
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||||| || || |||||||| ||| || ||||| ||||||
Sbjct 6258 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 6199
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| ||| |||| || |||||||| ||||| || ||||||||||||||
Sbjct 6198 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 6139
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | || |||
Sbjct 6138 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 6079
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| ||||| || || || || |||||||||
Sbjct 6078 CCCGTCAGGGTCTTGACGAAGATCTGCATG 6049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433816578976888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |